Gene: CSS0029675
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0029675
- Transcript Identifier CSS0029675.1
- Gene Type Coding gene
- Location Contig419 : 330697-341861 : positive
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004701
- #Genes/#Species 173/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid CSS0029675.1
Descriptions
- Description PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc08g042050.3 |
GO:0000373 | ISO | PLAZA Integrative Orthology | Group II intron splicing | Zm00001eb063300 |
GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT5G26742 |
GO:0042254 | ISO | PLAZA Integrative Orthology | ribosome biogenesis | Zm00001eb063300 |
GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | Zm00001eb063300 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0008270 | IEA | InterPro | zinc ion binding | |
GO:0003723 | IEA | InterPro | RNA binding | |
GO:0004386 | IEA | InterPro | helicase activity | |
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc08g042050.3 |
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G26742 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | Zm00001eb063300 |
GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G26742 |
GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G26742 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR036875 | Zinc finger, CCHC-type superfamily |
IPR001650 | Helicase, C-terminal |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
IPR001878 | Zinc finger, CCHC-type |
IPR012562 | GUCT |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
IPR011545 | DEAD/DEAH box helicase domain |
Mapman id | Description |
---|---|
16.11.4.1.1.5 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.basal splicing factor (RH3) |