Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 8.8e-148 527.3 315 100.0
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 8.8e-148 527.3 315 100.0
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 5.9e-128 461.5 316 87.0
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 7.8e-128 461.1 240 95.4
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 2.3e-127 459.5 315 88.3
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.9e-127 459.1 319 85.3
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.5e-126 456.1 319 85.0
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 3.3e-126 455.7 243 94.7
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 3.3e-126 455.7 243 94.7
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 4.3e-126 455.3 267 89.9
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 4.3e-126 455.3 267 89.9
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 9.5e-126 454.1 318 86.8
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.7e-125 451.8 317 83.3
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 6.1e-125 451.4 239 92.9
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.4e-124 450.3 267 88.8
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.4e-124 450.3 240 92.5
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.0e-124 448.7 317 83.0
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 5.2e-124 448.4 240 91.7
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 8.9e-124 447.6 239 92.1
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 1.2e-123 447.2 240 91.2
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.5e-123 446.8 239 91.6
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.5e-123 446.8 239 91.2
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 1.5e-123 446.8 240 91.2
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.5e-123 446.8 237 92.8
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 2.6e-123 446.0 240 91.2
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 2.6e-123 446.0 240 91.7
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.4e-123 445.3 326 81.3
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 7.5e-123 444.5 267 88.0
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 9.8e-123 444.1 239 92.1
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.3e-122 443.7 326 80.7
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.3e-122 443.7 241 90.9
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 1.3e-122 443.7 240 90.8
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 1.7e-122 443.4 241 90.9
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 4.9e-122 441.8 240 90.8
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 6.4e-122 441.4 240 91.7
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 1.9e-121 439.9 240 90.4
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 2.4e-121 439.5 240 90.4
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 3.2e-121 439.1 239 89.5
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 4.1e-121 438.7 239 91.2
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 4.1e-121 438.7 241 91.3
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 5.4e-121 438.3 239 91.6
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 7.0e-121 438.0 239 90.8
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 9.2e-121 437.6 328 82.0
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 9.2e-121 437.6 316 81.3
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.2e-120 437.2 239 89.5
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.2e-120 437.2 241 90.9
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 3.5e-120 435.6 316 82.6
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 7.8e-120 434.5 235 91.5
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 1.0e-119 434.1 240 89.6
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.3e-119 433.7 254 86.6
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.7e-119 433.3 249 87.6
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.0e-119 432.6 240 89.2
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 3.9e-119 432.2 312 78.2
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 8.6e-119 431.0 235 91.9
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.1e-118 430.6 229 92.1
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 3.3e-118 429.1 231 91.3
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 4.3e-118 428.7 233 90.6
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 5.6e-118 428.3 244 89.3
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 7.3e-118 427.9 244 88.9
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 7.3e-118 427.9 315 81.0
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 9.5e-118 427.6 229 90.8
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 2.8e-117 426.0 224 92.9
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 3.6e-117 425.6 316 81.0
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 4.0e-116 422.2 240 87.1
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.8e-116 421.4 313 84.7
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.2e-115 420.6 233 88.4
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 1.2e-115 420.6 233 88.4
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 2.0e-115 419.9 221 92.8
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 7.5e-115 417.9 228 89.0
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 9.8e-115 417.5 233 88.0
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 9.8e-115 417.5 222 91.4
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 1.3e-114 417.2 222 91.4
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 1.3e-114 417.2 222 91.4
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 1.7e-114 416.8 219 93.2
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.7e-114 416.8 222 91.9
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 2.9e-114 416.0 228 88.2
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 4.9e-114 415.2 257 83.7
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 6.4e-114 414.8 228 89.5
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 4.1e-113 412.1 219 91.3
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 5.4e-113 411.8 219 92.2
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 1.6e-112 410.2 232 87.1
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 3.5e-112 409.1 239 86.2
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 7.8e-112 407.9 383 68.9
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 1.7e-111 406.8 228 86.4
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 1.7e-111 406.8 209 95.2
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 3.9e-111 405.6 228 86.4
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 8.6e-111 404.4 228 86.0
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.5e-110 403.7 228 86.0
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.5e-110 403.7 228 86.0
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 1.5e-110 403.7 241 82.6
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.9e-110 403.3 228 86.0
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.9e-110 403.3 228 86.0
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 7.3e-110 401.4 228 86.0
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 7.3e-110 401.4 230 85.2
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 8.1e-109 397.9 233 84.5
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 4.0e-108 395.6 394 64.2
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 4.4e-107 392.1 232 84.5
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.7e-106 390.2 224 84.8
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 2.2e-106 389.8 241 80.5
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.2e-104 384.0 240 78.3
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.2e-104 384.0 241 79.7
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 7.8e-104 381.3 233 80.3
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 5.6e-102 375.2 208 89.9
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 7.6e-99 364.8 241 76.3
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 5.4e-97 358.6 269 84.0
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 1.2e-93 347.4 241 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 7.1e-89 331.6 181 89.5
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 1.0e-87 327.8 242 69.8
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 8.7e-87 324.7 569 39.5
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 1.1e-86 324.3 176 91.5
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.1e-86 324.3 342 54.7
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 1.5e-86 323.9 236 69.1
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.5e-86 323.2 228 73.7
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 1.1e-78 297.7 237 66.2
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 6.9e-76 288.5 247 65.2
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 4.5e-75 285.8 218 64.7
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.9e-74 283.1 175 82.3
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 3.8e-74 282.7 150 93.3
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 7.9e-72 275.0 207 71.5
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 2.3e-71 273.5 189 71.4
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 1.4e-65 254.2 209 82.8
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 5.1e-63 245.7 132 90.9
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.2e-61 240.4 225 58.7
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 1.4e-55 221.1 195 62.6
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.4e-55 221.1 131 81.7
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.8e-52 210.7 108 92.6
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.8e-52 210.7 183 83.6
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 4.1e-52 209.5 136 78.7
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 5.3e-52 209.1 107 94.4
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 6.9e-52 208.8 108 94.4
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.0e-51 207.2 107 94.4
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.7e-50 204.1 102 97.1
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.8e-47 194.1 109 88.1
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.7e-47 192.2 107 88.8
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 8.8e-47 191.8 107 86.0
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.2e-43 181.4 92 93.5
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 1.4e-41 174.5 95 90.5
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 4.2e-41 172.9 167 69.5
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.2e-40 171.4 95 89.5
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.1e-40 170.6 91 90.1
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.0e-39 166.8 133 67.7
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 4.7e-32 142.9 83 84.3
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 1.5e-30 137.9 71 91.5
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 1.5e-30 137.9 71 91.5
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.8e-26 123.2 91 72.5
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 3.7e-21 106.7 58 87.9
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 9.1e-20 102.1 136 69.1
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.5e-17 94.0 119 52.9
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 1.7e-10 71.2 136 69.1
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 5.0e-10 69.7 114 64.9
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 6.6e-10 69.3 38 86.8
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 8.6e-10 68.9 103 46.6
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 1.1e-09 68.6 38 84.2
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 2.1e-08 64.3 38 84.2
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 1.8e-07 61.2 38 78.9
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 8.9e-07 58.9 45 62.2


User provided reference genes

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