Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 0.0e+00 1198.7 883 100.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.0e-257 892.9 942 75.3
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.0e-225 786.6 643 75.7
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 2.7e-225 786.2 649 75.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 2.7e-222 776.2 644 77.5
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 4.7e-222 775.4 648 75.5
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 3.6e-214 749.2 642 70.6
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.3e-213 746.5 624 73.2
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.7e-211 740.3 576 79.7
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.0e-208 731.1 645 71.5
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.3e-207 724.9 599 73.6
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.3e-203 714.1 639 72.9
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 2.9e-203 713.0 660 68.6
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 2.9e-203 713.0 644 69.9
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 6.6e-200 701.8 660 68.9
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 6.6e-200 701.8 643 71.7
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 8.6e-200 701.4 641 71.0
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.1e-199 701.0 662 70.8
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.5e-199 699.9 644 69.3
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 5.6e-199 698.7 623 69.2
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 7.3e-199 698.4 617 75.2
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 3.6e-198 696.0 635 68.8
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.0e-196 690.3 670 63.3
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.7e-195 687.2 625 72.8
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.2e-195 686.8 645 71.8
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 3.7e-195 686.0 636 69.7
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.7e-195 686.0 639 66.4
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.4e-195 685.3 645 71.8
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.4e-194 684.1 645 71.6
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.4e-194 684.1 648 68.2
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.4e-194 684.1 617 71.8
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 3.2e-194 682.9 652 67.6
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 4.1e-194 682.6 639 69.0
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-193 681.0 645 71.5
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.7e-193 679.9 575 68.9
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.0e-192 677.9 628 68.8
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.3e-192 676.8 628 68.6
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.3e-192 676.8 625 67.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 3.0e-192 676.4 641 66.9
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 3.9e-192 676.0 595 71.4
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.6e-192 675.2 645 70.5
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.6e-192 675.2 658 67.2
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 6.6e-192 675.2 644 68.0
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 2.5e-191 673.3 632 69.1
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.2e-190 671.0 633 67.8
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 6.2e-190 668.7 636 66.4
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.4e-189 667.5 596 71.8
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.0e-189 666.0 654 63.5
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 6.8e-189 665.2 635 69.0
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 6.8e-189 665.2 622 67.4
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 8.9e-189 664.8 646 66.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 8.9e-189 664.8 642 67.8
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.2e-188 664.5 605 70.6
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.5e-188 664.1 636 68.6
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 8.3e-187 658.3 640 63.9
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.9e-186 657.1 637 69.5
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 5.4e-186 655.6 665 61.5
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 9.2e-186 654.8 639 63.8
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 6.0e-185 652.1 573 71.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.3e-184 650.2 656 66.6
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.1e-183 647.9 568 71.7
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 7.3e-183 645.2 656 66.3
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 2.1e-182 643.7 616 66.9
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 3.6e-182 642.9 627 69.5
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 8.1e-182 641.7 627 69.4
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 3.4e-180 636.3 657 67.3
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 5.4e-178 629.0 606 69.1
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.1e-177 627.1 575 65.4
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 2.7e-177 626.7 609 69.0
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 3.5e-177 626.3 558 70.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 4.6e-177 625.9 640 66.1
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 6.0e-177 625.5 600 69.5
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 7.3e-175 618.6 651 65.1
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 6.2e-174 615.5 670 59.7
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 4.4e-172 609.4 584 64.0
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.7e-171 607.4 589 64.7
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 6.4e-171 605.5 559 71.7
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.2e-169 601.3 630 63.3
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 3.5e-169 599.7 651 60.2
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.7e-168 597.4 652 63.5
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 3.0e-168 596.7 649 60.1
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.5e-167 594.3 643 64.5
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.6e-166 590.9 636 61.8
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.8e-165 587.4 653 60.0
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.8e-165 587.4 657 60.0
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.4e-165 587.0 666 55.7
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.3e-163 581.3 627 59.0
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.9e-163 579.3 498 68.9
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 6.0e-161 572.4 634 58.5
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 6.0e-161 572.4 634 58.5
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.3e-160 571.2 617 59.0
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.8e-160 570.9 634 58.4
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 4.3e-159 566.2 636 64.3
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 4.3e-159 566.2 636 64.3
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 7.4e-159 565.5 625 61.3
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 7.6e-156 555.4 642 56.7
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 8.4e-155 552.0 642 56.2
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 8.4e-155 552.0 645 61.9
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.9e-151 540.8 477 74.2
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 8.2e-150 535.4 499 62.9
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.8e-149 534.3 605 57.9
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 6.3e-134 482.6 467 73.2
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.1e-114 418.7 610 51.8
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.6e-113 413.7 507 54.8
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 5.2e-112 409.8 622 52.1
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.3e-107 395.2 297 70.4
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.6e-103 380.9 300 66.7
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.6e-99 365.9 589 59.1
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.5e-90 338.6 533 46.5
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 4.4e-87 327.0 516 48.6
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 9.8e-87 325.9 216 75.0
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.0e-80 303.9 291 70.4
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.3e-78 298.9 335 63.6
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 6.0e-76 290.0 586 44.7
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 6.8e-72 276.6 255 65.5
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 6.4e-70 270.0 601 44.8
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.4e-69 268.9 687 42.6
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 2.7e-68 264.6 177 76.8
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 4.2e-61 240.7 299 49.2
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 5.4e-61 240.4 276 57.6
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 9.6e-58 229.6 178 69.1
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.1e-57 228.4 207 62.3
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 5.7e-34 150.6 142 67.6
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 3.2e-21 108.2 58 87.9
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 3.6e-20 104.8 88 59.1
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 6.1e-20 104.0 86 72.1
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 4.4e-18 97.8 85 60.0
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 2.8e-17 95.1 70 67.1
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 2.4e-16 92.0 97 54.6
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 4.1e-16 91.3 429 25.9
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.7e-14 85.9 78 74.4
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 1.7e-14 85.9 94 57.4
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.5e-13 82.0 97 51.5
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 7.2e-13 80.5 264 37.5
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 6.7e-11 73.9 263 32.3
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 2.0e-10 72.4 145 60.7
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 7.4e-10 70.5 270 34.8
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 7.4e-10 70.5 468 27.4
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 9.1e-08 63.5 89 43.8
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 1.6e-07 62.8 113 45.1
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.7e-06 59.3 100 37.0
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.7e-06 59.3 100 37.0
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 2.2e-06 58.9 103 35.9
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 2.9e-06 58.5 99 37.4
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 3.8e-06 58.2 103 37.9
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.8e-06 58.2 110 32.7
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 5.0e-06 57.8 100 35.0
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 5.0e-06 57.8 100 35.0
BolC2t09504H Brassica oleracea HOM05D005307 ORTHO05D027550 6.5e-06 57.4 195 37.9
Cfa019452 Carpinus fangiana HOM05D001023 ORTHO05D000912 6.5e-06 57.4 103 36.9
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.5e-06 57.4 100 36.0
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.5e-06 57.4 100 36.0
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 6.5e-06 57.4 100 36.0
SMO239G0096 Selaginella moellendorffii HOM05D042108 ORTHO05D377878 6.5e-06 57.4 74 51.4
THA.LOC104810411 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 6.5e-06 57.4 99 34.3
Aa31LG8G1720 Aethionema arabicum HOM05D001023 ORTHO05D000912 8.5e-06 57.0 100 36.0


User provided reference genes

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