Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003734 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 9.8e-52 206.5 100 100.0
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 2.2e-27 125.6 63 95.2
vmacro00917 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 2.4e-26 122.1 63 92.1
Dinv22067 Davidia involucrata HOM05D003132 ORTHO05D003736 7.1e-26 120.6 62 91.9
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.2e-25 119.8 62 91.9
Lj9C693G4 Lonicera japonica HOM05D003132 ORTHO05D003736 2.7e-25 118.6 65 86.2
GSVIVG01037118001 Vitis vinifera HOM05D003132 ORTHO05D003736 3.5e-25 118.2 65 86.2
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 3.9e-24 114.8 63 90.5
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 5.1e-24 114.4 65 84.6
Thecc.08G166600 Theobroma cacao HOM05D003132 ORTHO05D003736 6.6e-24 114.0 65 84.6
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 1.5e-23 112.8 62 87.1
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 4.3e-23 111.3 63 85.7
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 4.3e-23 111.3 65 81.5
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 7.3e-23 110.5 63 85.7
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 7.3e-23 110.5 63 84.1
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 9.6e-23 110.2 63 85.7
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 9.6e-23 110.2 63 85.7
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 1.3e-22 109.8 63 84.1
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 1.6e-22 109.4 63 85.7
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 2.1e-22 109.0 63 84.1
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 2.8e-22 108.6 62 87.1
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 3.6e-22 108.2 65 81.5
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 3.6e-22 108.2 98 60.2
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 3.6e-22 108.2 63 84.1
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 4.8e-22 107.8 63 84.1
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 4.8e-22 107.8 63 84.1
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.8e-22 107.8 65 81.5
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 4.8e-22 107.8 64 81.2
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 6.2e-22 107.5 62 85.5
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 1.1e-21 106.7 62 80.6
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.4e-21 106.3 62 85.5
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 1.4e-21 106.3 62 82.3
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 1.4e-21 106.3 63 76.2
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 1.8e-21 105.9 63 84.1
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 3.1e-21 105.1 63 77.8
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 3.1e-21 105.1 63 77.8
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 3.1e-21 105.1 63 77.8
Manes.18G072550 Manihot esculenta HOM05D003132 ORTHO05D003736 4.0e-21 104.8 64 75.0
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 5.3e-21 104.4 63 76.2
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 5.3e-21 104.4 63 76.2
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 5.3e-21 104.4 63 76.2
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 5.3e-21 104.4 63 76.2
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 6.9e-21 104.0 63 74.6
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 6.9e-21 104.0 63 74.6
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 6.9e-21 104.0 63 74.6
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 6.9e-21 104.0 63 74.6
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 6.9e-21 104.0 63 74.6
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 6.9e-21 104.0 63 74.6
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 6.9e-21 104.0 63 74.6
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 9.0e-21 103.6 63 74.6
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 9.0e-21 103.6 63 74.6
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 9.0e-21 103.6 63 76.2
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 9.0e-21 103.6 63 76.2
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 9.0e-21 103.6 63 76.2
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 9.0e-21 103.6 63 77.8
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 9.0e-21 103.6 63 76.2
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 9.0e-21 103.6 63 76.2
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.2e-20 103.2 66 74.2
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 1.2e-20 103.2 63 76.2
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 1.2e-20 103.2 63 76.2
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 1.2e-20 103.2 63 76.2
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 1.2e-20 103.2 63 76.2
Zm00001eb398120 Zea mays HOM05D003132 ORTHO05D003736 1.2e-20 103.2 64 75.0
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.5e-20 102.8 63 76.2
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.5e-20 102.8 63 74.6
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 1.5e-20 102.8 63 74.6
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 1.5e-20 102.8 66 72.7
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 1.5e-20 102.8 63 74.6
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 1.5e-20 102.8 63 74.6
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 1.5e-20 102.8 62 77.4
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 1.5e-20 102.8 63 74.6
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 2.0e-20 102.4 63 74.6
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 2.0e-20 102.4 63 76.2
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 2.0e-20 102.4 63 76.2
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 2.0e-20 102.4 63 74.6
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 2.0e-20 102.4 63 76.2
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 2.0e-20 102.4 63 74.6
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 2.6e-20 102.1 63 76.2
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 2.6e-20 102.1 63 77.8
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 2.6e-20 102.1 63 77.8
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 2.6e-20 102.1 62 79.0
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 2.6e-20 102.1 63 74.6
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 3.4e-20 101.7 63 74.6
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 3.4e-20 101.7 63 74.6
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 74.6
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 74.6
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 76.2
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 76.2
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 74.6
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 74.6
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 74.6
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 74.6
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 76.2
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 74.6
VMungo1080G0294 Vigna mungo HOM05D003132 ORTHO05D003736 4.5e-20 101.3 62 79.0
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 76.2
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 4.5e-20 101.3 63 76.2
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 5.8e-20 100.9 63 73.0
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 5.8e-20 100.9 63 73.0
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 5.8e-20 100.9 63 73.0
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 5.8e-20 100.9 63 73.0
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 5.8e-20 100.9 63 74.6
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 5.8e-20 100.9 63 74.6
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 7.6e-20 100.5 63 79.4
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 7.6e-20 100.5 56 89.3
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 7.6e-20 100.5 63 73.0
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 7.6e-20 100.5 74 67.6
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 7.6e-20 100.5 63 74.6
Psat5g230840 Pisum sativum HOM05D003132 ORTHO05D003736 7.6e-20 100.5 62 77.4
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 9.9e-20 100.1 98 55.1
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 9.9e-20 100.1 63 74.6
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 9.9e-20 100.1 63 73.0
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 9.9e-20 100.1 63 73.0
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 9.9e-20 100.1 62 79.0
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.3e-19 99.8 63 73.0
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 1.3e-19 99.8 63 73.0
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 1.3e-19 99.8 63 74.6
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 1.3e-19 99.8 63 74.6
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 1.3e-19 99.8 63 71.4
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 1.3e-19 99.8 63 71.4
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 1.3e-19 99.8 63 73.0
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 1.7e-19 99.4 63 73.0
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 1.7e-19 99.4 63 71.4
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 1.7e-19 99.4 63 73.0
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 1.7e-19 99.4 63 73.0
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 2.2e-19 99.0 56 83.9
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 2.2e-19 99.0 56 83.9
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 2.2e-19 99.0 62 77.4
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 2.2e-19 99.0 62 74.2
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 2.2e-19 99.0 62 74.2
SEGI_27881 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 2.2e-19 99.0 71 70.4
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 2.2e-19 99.0 63 71.4
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 2.9e-19 98.6 67 70.1
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 2.9e-19 98.6 63 74.6
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 2.9e-19 98.6 63 73.0
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 2.9e-19 98.6 61 75.4
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 2.9e-19 98.6 72 68.1
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 3.8e-19 98.2 63 71.4
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 4.9e-19 97.8 63 74.6
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 4.9e-19 97.8 63 73.0
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 4.9e-19 97.8 63 73.0
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 4.9e-19 97.8 63 73.0
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 4.9e-19 97.8 63 73.0
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 6.4e-19 97.4 63 71.4
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 6.4e-19 97.4 63 71.4
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 6.4e-19 97.4 63 71.4
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 6.4e-19 97.4 63 71.4
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 6.4e-19 97.4 63 71.4
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 6.4e-19 97.4 63 71.4
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 6.4e-19 97.4 63 73.0
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 8.4e-19 97.1 62 72.6
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 8.4e-19 97.1 63 69.8
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 8.4e-19 97.1 62 71.0
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 1.1e-18 96.7 63 73.0
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 1.1e-18 96.7 62 71.0
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 1.1e-18 96.7 62 71.0
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 1.4e-18 96.3 63 74.6
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.9e-18 95.9 63 69.8
Cc00_g24650 Coffea canephora HOM05D003132 ORTHO05D003736 2.4e-18 95.5 62 71.0
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 3.2e-18 95.1 62 72.6
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 9.3e-18 93.6 63 69.8
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 1.2e-17 93.2 62 71.0
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 1.6e-17 92.8 63 66.7
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 3.5e-17 91.7 62 69.4
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 6.0e-17 90.9 63 68.3
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 6.0e-17 90.9 63 66.7
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 6.0e-17 90.9 63 66.7
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 7.9e-17 90.5 56 78.6
SHI23773 Sapria himalayana HOM05D003132 ORTHO05D003736 7.9e-17 90.5 62 64.5
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 7.9e-17 90.5 55 78.2
Zm00001eb090720 Zea mays HOM05D003132 ORTHO05D003736 1.3e-16 89.7 62 71.0
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 1.8e-16 89.4 62 66.1
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 1.1e-15 86.7 62 67.7
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 1.1e-15 86.7 61 65.6
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 1.9e-15 85.9 61 67.2
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 2.5e-15 85.5 52 76.9
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 3.1e-13 78.6 64 62.5
Ca_14120_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 1.2e-12 76.6 47 76.6
Cre12.g547450 Chlamydomonas reinhardtii HOM05D003132 ORTHO05D003736 1.7e-11 72.8 61 54.1
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.2e-11 72.4 56 66.1
Cfa026479 Carpinus fangiana HOM05D003132 ORTHO05D003736 4.2e-10 68.2 77 44.2
CARHR032860 Cardamine hirsuta HOM05D003132 ORTHO05D038701 7.1e-10 67.4 53 56.6
Potri.013G092250 Populus trichocarpa HOM05D003132 ORTHO05D003736 3.0e-08 62.0 73 49.3


User provided reference genes

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