Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 6.1e-227 790.4 385 100.0
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.0e-161 572.8 383 74.7
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 8.5e-160 567.4 383 73.9
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.8e-149 533.1 383 67.1
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.1e-148 530.4 379 69.4
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.0e-145 519.6 382 67.3
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 1.0e-133 480.7 374 65.2
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.0e-133 480.7 387 63.8
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.4e-133 480.3 361 64.8
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.7e-131 473.4 383 62.7
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.2e-131 473.0 387 60.2
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.8e-130 469.9 330 67.3
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.8e-130 469.9 387 59.9
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 2.7e-129 466.1 349 65.0
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 5.9e-129 464.9 380 61.6
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.3e-128 463.8 351 63.8
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 3.2e-127 459.1 359 62.1
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 1.6e-126 456.8 382 57.9
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 2.1e-126 456.4 339 65.8
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 3.6e-126 455.7 360 60.6
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 2.3e-125 453.0 384 58.3
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 2.3e-125 453.0 335 64.5
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 5.2e-125 451.8 316 67.1
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 7.5e-124 448.0 373 61.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 7.5e-124 448.0 364 61.0
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.3e-123 447.2 364 61.0
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 3.7e-123 445.7 312 66.3
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 4.8e-123 445.3 319 65.5
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.1e-122 444.1 339 64.9
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.1e-122 444.1 364 61.0
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.8e-122 443.4 268 76.1
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 4.1e-122 442.2 310 69.7
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 9.1e-122 441.0 332 64.2
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.2e-121 440.7 324 65.4
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 1.2e-121 440.7 343 60.6
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.6e-121 440.3 338 61.5
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 2.7e-121 439.5 341 65.1
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 8.6e-120 434.5 363 59.0
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 1.9e-119 433.3 341 60.4
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.9e-119 433.3 341 60.4
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 4.2e-119 432.2 389 58.6
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.2e-119 431.4 325 61.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 9.5e-119 431.0 376 57.4
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.6e-118 430.3 334 60.8
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.6e-118 429.1 330 60.3
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 3.6e-118 429.1 384 57.6
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.4e-117 427.2 304 66.1
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 9.8e-116 421.0 362 58.8
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.7e-115 420.2 349 60.7
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 2.2e-115 419.9 316 61.4
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 2.4e-114 416.4 338 59.8
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 5.4e-114 415.2 312 67.9
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.4e-114 415.2 368 58.2
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 5.4e-114 415.2 376 56.1
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 2.0e-113 413.3 333 61.0
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.7e-113 412.9 323 62.5
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.3e-112 410.6 344 58.7
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-112 410.6 243 75.7
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.7e-112 410.2 390 54.6
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 2.3e-112 409.8 335 60.9
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 5.0e-112 408.7 260 74.2
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 5.0e-112 408.7 243 75.7
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 6.6e-112 408.3 335 59.4
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 6.6e-112 408.3 334 59.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 8.6e-112 407.9 346 59.2
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 9.5e-111 404.4 338 58.6
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.6e-110 403.7 268 70.5
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 3.6e-110 402.5 350 58.0
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 3.6e-110 402.5 335 58.2
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.0e-109 401.0 344 56.1
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 1.8e-109 400.2 368 54.9
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 3.0e-109 399.4 335 57.9
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 6.8e-109 398.3 316 60.1
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.2e-108 397.5 344 56.1
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 1.5e-108 397.1 256 69.1
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 5.7e-108 395.2 364 53.3
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 7.5e-108 394.8 316 59.8
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 9.8e-108 394.4 316 59.8
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 2.4e-106 389.8 319 59.9
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 5.4e-106 388.7 342 57.0
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 5.4e-106 388.7 335 55.8
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 5.4e-106 388.7 326 58.6
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 2.0e-105 386.7 387 50.9
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.0e-104 384.4 330 57.3
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.7e-104 383.6 355 55.2
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 7.3e-103 378.3 317 59.0
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 1.8e-101 373.6 340 55.6
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 3.1e-101 372.9 335 56.1
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 6.8e-101 371.7 324 57.7
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.2e-100 370.9 383 51.4
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 3.4e-100 369.4 324 57.4
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 5.8e-100 368.6 277 68.6
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 3.7e-99 365.9 317 57.1
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.4e-98 364.0 338 54.4
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 3.2e-98 362.8 311 56.9
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 9.2e-98 361.3 345 53.9
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.2e-97 360.9 345 53.6
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 2.0e-97 360.1 317 56.8
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.7e-97 359.8 407 50.4
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 3.1e-93 346.3 383 50.1
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 5.2e-93 345.5 331 55.0
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 8.9e-93 344.7 370 51.1
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 8.3e-91 338.2 354 50.8
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.1e-90 337.8 346 51.7
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 3.2e-90 336.3 320 55.3
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.6e-89 334.0 284 57.0
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.8e-89 331.6 386 48.7
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 8.6e-88 328.2 267 58.4
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-87 327.4 255 62.4
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 8.9e-85 318.2 319 53.3
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 4.4e-84 315.8 317 52.4
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 3.2e-82 309.7 200 72.0
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 5.1e-80 302.4 317 52.1
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.6e-80 302.0 294 55.4
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 8.1e-78 295.0 220 60.9
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.1e-74 284.6 244 56.6
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.9e-74 283.9 350 43.1
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 3.6e-70 269.6 264 50.8
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.1e-66 258.1 242 55.0
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 5.4e-66 255.8 356 39.9
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 9.3e-66 255.0 316 45.6
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.6e-65 254.2 230 54.3
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.1e-63 248.1 344 41.6
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 7.4e-63 245.4 184 63.6
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 7.6e-60 235.3 216 56.0
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.4e-53 213.8 299 42.8
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.9e-51 206.8 133 69.2
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 2.2e-46 190.7 163 60.1
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 4.2e-42 176.4 184 45.7
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.6e-36 157.1 147 53.7
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.0e-35 155.2 175 48.6
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 3.6e-33 146.7 282 34.8
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.2e-26 123.2 159 44.7
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 2.6e-23 114.0 97 53.6
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 3.3e-23 113.6 142 47.9
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 2.5e-18 97.4 114 40.4
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 5.5e-18 96.3 75 58.7
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 9.4e-18 95.5 74 63.5
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 4.0e-16 90.1 64 56.2
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 6.7e-16 89.4 67 52.2
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 1.3e-14 85.1 134 46.3
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 8.2e-14 82.4 80 58.8
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 1.5e-10 71.6 122 34.4
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 6.1e-09 66.2 130 41.5


User provided reference genes

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