Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 1.7e-108 396.0 195 100.0
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 5.0e-100 367.9 194 90.7
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 3.6e-98 361.7 194 91.2
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.0e-97 360.1 194 89.7
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 6.7e-97 357.5 194 88.1
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 8.8e-97 357.1 194 88.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 2.6e-96 355.5 194 87.6
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 7.4e-96 354.0 225 80.4
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 9.7e-96 353.6 194 86.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 88.1
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.2e-95 352.4 194 86.6
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 87.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 87.6
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 1.8e-94 349.4 193 86.5
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.1
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 86.1
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 86.1
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 86.1
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 86.1
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 7.0e-94 347.4 194 85.6
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 7.0e-94 347.4 194 85.6
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 9.1e-94 347.1 194 86.1
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 84.5
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 85.1
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 85.1
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 1.2e-93 346.7 194 85.1
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 85.1
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 85.6
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 86.1
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 3.5e-93 345.1 194 85.6
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 3.5e-93 345.1 194 85.1
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 3.5e-93 345.1 194 85.6
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 3.5e-93 345.1 194 85.1
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 86.1
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 84.5
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.7e-92 342.8 200 82.5
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 83.0
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 85.6
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 85.1
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 83.5
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 85.1
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 83.0
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 84.5
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 83.5
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 85.1
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 6.5e-92 340.9 195 84.6
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.5e-91 339.7 194 85.1
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 82.5
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 84.0
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 85.1
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 84.5
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 2.5e-91 339.0 194 82.5
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 84.0
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 5.5e-91 337.8 194 83.0
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 9.4e-91 337.0 195 84.6
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 9.4e-91 337.0 194 82.5
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 82.5
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 3.6e-90 335.1 214 76.6
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 4.7e-90 334.7 214 78.0
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 4.7e-90 334.7 214 76.6
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 81.4
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 80.4
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 80.4
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 6.7e-89 330.9 188 82.4
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.9
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 2.6e-88 328.9 194 80.9
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.6e-88 328.9 194 80.9
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 2.6e-88 328.9 194 81.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.6e-88 328.9 194 80.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 5.7e-88 327.8 194 80.4
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 7.5e-88 327.4 194 79.4
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 7.5e-88 327.4 194 80.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 80.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 80.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 9.7e-88 327.0 195 82.1
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.7e-87 326.2 187 81.3
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 2.2e-87 325.9 194 80.9
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.2e-87 325.9 187 81.3
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 4.8e-87 324.7 235 70.6
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 80.9
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 80.9
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 6.3e-87 324.3 194 80.9
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 8.2e-87 323.9 210 74.8
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.4e-86 323.2 194 82.0
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 80.4
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 9.1e-86 320.5 194 79.9
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.6e-85 319.7 178 84.8
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 1.5e-83 313.2 274 62.0
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.2e-83 312.0 174 86.2
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.6e-82 309.7 193 78.2
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 6.1e-82 307.8 194 75.8
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 5.7e-80 301.2 210 71.9
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 5.7e-80 301.2 297 55.9
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 7.5e-80 300.8 175 82.9
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.3e-79 300.1 194 76.8
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 3.7e-79 298.5 194 68.6
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.7e-79 298.5 194 73.2
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 6.3e-79 297.7 194 74.7
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.4e-78 296.6 194 72.2
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 1.2e-77 293.5 192 70.8
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 2.0e-77 292.7 161 88.2
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 7.7e-77 290.8 195 69.7
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.0e-76 290.4 160 86.2
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.3e-76 290.0 162 85.2
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 1.1e-75 287.0 283 56.5
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 4.9e-71 271.6 172 71.5
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 5.0e-60 235.0 120 93.3
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.3e-59 232.3 120 90.8
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.3e-59 231.9 120 91.7
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 3.7e-55 218.8 134 77.6
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 1.1e-54 217.2 178 59.0
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 1.3e-52 210.3 114 91.2
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.9e-52 208.8 121 81.0
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.9e-51 206.5 123 79.7
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 4.7e-50 201.8 123 76.4
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 2.9e-47 192.6 191 49.7
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 6.6e-44 181.4 112 75.9
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.5e-43 180.3 114 76.3
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.5e-40 170.2 93 86.0
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 2.0e-40 169.9 173 50.3
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.6e-40 169.5 99 79.8
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 2.9e-39 166.0 122 65.6
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.3e-36 157.1 97 80.4
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 9.6e-35 151.0 179 43.6
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.3e-31 140.6 73 87.7
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 2.9e-31 139.4 76 81.6
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.1e-30 137.5 71 85.9
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 7.1e-30 134.8 88 75.0
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 7.1e-30 134.8 88 75.0
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 7.8e-29 131.3 73 82.2
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 7.8e-29 131.3 73 82.2
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 7.8e-29 131.3 73 82.2
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.9e-27 126.7 64 89.1
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.5e-19 99.8 74 68.9
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.7e-18 95.9 59 79.7
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 7.6e-16 88.2 55 78.2
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.2e-14 82.4 94 50.0
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.7e-13 79.7 83 54.2
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 2.7e-13 79.7 83 54.2
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 3.0e-12 76.3 71 57.7
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 3.1e-09 66.2 56 60.7
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.3e-09 65.5 93 44.1


User provided reference genes

Program Settings