Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 6.0e-153 544.3 304 100.0
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.3e-134 483.4 303 86.1
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 3.7e-134 481.9 304 90.5
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 4.8e-134 481.5 303 91.4
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.4e-133 479.9 304 84.5
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 3.5e-132 475.3 304 83.6
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.3e-131 473.4 304 89.5
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 4.2e-130 468.4 306 84.0
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 4.2e-130 468.4 306 84.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 7.2e-130 467.6 306 80.7
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 9.4e-130 467.2 306 83.7
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 306 84.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 306 84.0
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 3.6e-129 465.3 304 80.3
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.8e-128 463.0 304 84.2
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 304 81.9
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.9e-128 461.8 304 85.9
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 5.2e-128 461.5 306 83.0
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.1e-127 460.3 303 83.5
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.0e-127 459.5 304 84.9
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.3e-127 458.8 302 83.8
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 4.4e-127 458.4 306 80.4
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 4.4e-127 458.4 304 84.5
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 81.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.7e-126 456.4 304 84.9
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.2e-126 456.1 304 80.9
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.8e-126 455.7 304 77.6
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.8e-126 454.9 304 81.2
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 6.3e-126 454.5 308 83.8
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 6.3e-126 454.5 308 83.8
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 6.3e-126 454.5 308 83.8
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 8.2e-126 454.1 306 81.4
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 8.2e-126 454.1 304 80.9
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 8.2e-126 454.1 304 80.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.1e-125 453.8 304 80.6
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.4e-125 452.6 304 79.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.1e-125 452.2 302 80.5
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 4.1e-125 451.8 305 81.0
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 7.0e-125 451.1 315 78.4
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 7.0e-125 451.1 306 77.8
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 7.0e-125 451.1 304 80.6
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 7.0e-125 451.1 303 78.5
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 79.3
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.6e-124 449.9 304 82.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.6e-124 449.9 298 82.2
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.6e-124 449.9 304 80.6
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.6e-124 449.9 304 80.6
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.0e-124 449.5 306 80.4
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.0e-124 449.5 305 80.0
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 3.5e-124 448.7 304 79.3
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 3.5e-124 448.7 304 79.6
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 7.7e-124 447.6 305 81.0
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 7.7e-124 447.6 305 81.0
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.0e-123 447.2 304 80.9
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.0e-123 447.2 308 79.2
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.0e-123 447.2 306 80.1
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.3e-123 446.8 304 78.3
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.3e-123 446.8 304 79.6
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.3e-123 446.8 306 80.1
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 81.6
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 80.6
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.7e-123 446.4 302 78.8
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.7e-123 446.4 305 80.3
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 2.2e-123 446.0 305 78.0
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 5.0e-123 444.9 304 79.3
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 6.5e-123 444.5 305 77.7
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.5e-123 444.5 306 76.1
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.5e-123 444.1 305 80.7
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 79.6
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.5e-122 442.6 304 76.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.5e-122 442.6 304 76.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.2e-122 442.2 298 79.9
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 5.5e-122 441.4 307 82.7
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 78.9
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 77.0
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 6.1e-121 438.0 305 80.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.8e-120 436.4 306 75.8
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.8e-120 436.4 305 79.0
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 6.8e-120 434.5 304 76.6
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 8.8e-120 434.1 317 74.4
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 8.8e-120 434.1 283 81.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.2e-119 433.7 304 80.9
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 3.4e-119 432.2 306 77.1
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 5.7e-119 431.4 304 74.7
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.3e-118 430.3 304 75.7
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 2.2e-118 429.5 304 75.3
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.7e-118 428.7 314 74.5
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 3.7e-118 428.7 318 73.9
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.4e-117 426.0 304 74.7
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 5.3e-117 424.9 306 73.9
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.2e-116 423.7 301 80.4
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 3.5e-116 422.2 305 79.0
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.0e-115 420.6 304 79.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 5.0e-115 418.3 305 78.7
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.1e-114 417.2 304 75.3
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.9e-114 416.4 305 78.4
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.9e-114 416.4 304 75.7
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 5.5e-114 414.8 304 73.0
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.7e-113 412.5 304 75.3
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.3e-112 409.5 304 75.3
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 3.0e-112 409.1 304 75.0
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 5.2e-112 408.3 306 78.4
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 4.4e-111 405.2 304 72.0
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 9.8e-111 404.1 304 71.4
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.8e-110 402.5 304 71.1
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.4e-109 400.2 304 72.4
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.4e-109 400.2 304 72.4
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.4e-109 400.2 304 72.4
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 5.4e-109 398.3 304 70.4
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 5.9e-108 394.8 312 66.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 6.1e-105 384.8 303 68.3
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-103 380.2 282 75.2
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 2.0e-103 379.8 304 67.4
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 2.3e-99 366.3 304 64.8
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 4.4e-95 352.1 292 69.5
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 5.4e-93 345.1 316 63.9
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 6.0e-92 341.7 326 62.9
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 9.5e-90 334.3 197 84.3
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.8e-87 325.1 305 57.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.1e-85 318.2 254 73.2
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.1e-80 304.3 304 61.5
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.4e-80 303.9 254 66.5
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 6.8e-80 301.6 300 56.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.7e-78 297.0 195 77.9
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 8.3e-78 294.7 305 53.8
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.7e-67 260.4 303 52.1
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 8.7e-67 258.1 136 95.6
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.6e-65 252.7 196 74.0
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.1e-59 232.3 273 57.9
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 6.9e-56 221.9 218 61.9
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 6.4e-54 215.3 214 62.1
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 4.3e-50 202.6 310 44.5
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 2.8e-49 199.9 296 45.6
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.1e-48 198.0 164 75.6
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 6.5e-46 188.7 193 58.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 7.1e-45 185.3 231 51.5
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-43 180.6 194 55.7
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 8.2e-41 171.8 199 48.2
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 3.4e-39 166.4 104 73.1
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 8.4e-38 161.8 109 76.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 4.8e-33 146.0 102 67.6
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-30 137.1 196 44.9
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 4.6e-28 129.4 262 45.0
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 3.8e-22 109.8 77 71.4
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.9e-21 107.5 77 68.8
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.5e-21 107.1 61 78.7
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 6.1e-20 102.4 153 49.7
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 5.1e-19 99.4 304 32.2
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 8.8e-19 98.6 116 62.1
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.5e-18 97.8 304 32.2
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 3.3e-18 96.7 59 74.6
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 5.3e-16 89.4 115 53.9
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-13 81.3 97 55.7
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 8.0e-12 75.5 55 80.0
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 3.0e-11 73.6 102 51.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.7e-09 67.8 132 43.9
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 8.5e-06 55.5 78 43.6


User provided reference genes

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