Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 9.1e-198 693.3 343 100.0
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.4e-142 510.0 345 75.4
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.1e-137 493.8 354 74.3
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 4.5e-128 461.8 345 70.1
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 5.8e-128 461.5 337 69.1
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 7.6e-128 461.1 334 70.7
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.3e-127 460.3 338 69.8
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 2.9e-127 459.1 337 69.1
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 2.9e-127 459.1 337 69.1
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 2.9e-127 459.1 337 70.9
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 2.1e-125 453.0 348 66.7
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 2.1e-125 453.0 342 67.8
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 2.1e-125 453.0 341 66.9
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 6.0e-125 451.4 341 67.7
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.0e-124 450.7 343 66.8
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.3e-124 450.3 340 66.5
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.3e-124 449.5 339 69.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.1e-123 447.2 337 66.8
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 1.9e-123 446.4 338 66.6
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 1.9e-123 446.4 338 66.6
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 2.5e-123 446.0 337 68.2
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 3.3e-123 445.7 350 66.6
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 6.2e-122 441.4 345 64.6
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.1e-121 440.7 353 63.5
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.4e-121 440.3 339 65.8
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 2.4e-121 439.5 336 64.3
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 9.0e-121 437.6 316 70.6
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 2.0e-120 436.4 339 66.1
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 2.0e-120 436.4 339 67.3
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 3.4e-120 435.6 336 67.3
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 5.8e-120 434.9 336 65.8
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 9.9e-120 434.1 340 64.4
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 9.9e-120 434.1 336 66.4
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 2.9e-119 432.6 335 66.0
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 8.4e-119 431.0 348 61.8
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 8.4e-119 431.0 343 64.4
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.1e-118 430.6 335 66.0
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.4e-118 430.3 334 63.8
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 2.5e-118 429.5 316 69.3
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 4.2e-118 428.7 376 60.6
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 5.5e-118 428.3 343 65.6
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 7.1e-118 427.9 348 61.8
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 9.3e-118 427.6 336 65.2
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.2e-117 427.2 376 59.8
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.6e-117 426.8 335 66.3
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 3.5e-117 425.6 340 65.3
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.0e-116 424.1 336 64.6
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.3e-116 423.7 336 64.9
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 2.3e-116 422.9 338 64.5
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 3.0e-116 422.5 345 62.9
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 5.1e-116 421.8 335 65.4
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.7e-116 421.4 338 64.5
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.1e-115 420.6 337 62.6
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.5e-115 420.2 342 64.6
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 3.3e-115 419.1 336 62.8
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 1.3e-114 417.2 365 59.7
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 2.1e-114 416.4 338 63.3
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 2.1e-114 416.4 338 63.6
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 2.8e-114 416.0 336 64.3
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 2.8e-114 416.0 343 63.8
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.8e-114 416.0 334 63.8
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 3.7e-114 415.6 336 63.1
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 8.2e-114 414.5 328 65.2
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.1e-113 414.1 364 60.7
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.8e-113 413.3 295 72.9
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.4e-113 412.9 281 71.9
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 3.1e-113 412.5 325 67.7
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 4.0e-113 412.1 314 67.2
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 6.9e-113 411.4 334 63.2
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 6.9e-113 411.4 334 63.2
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 6.9e-113 411.4 334 63.2
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.2e-112 410.6 294 71.4
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.2e-112 410.6 342 61.4
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.6e-112 409.5 327 65.4
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 4.5e-112 408.7 335 64.8
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 5.8e-112 408.3 282 71.6
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.3e-111 407.1 338 60.7
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 3.8e-111 405.6 338 61.5
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 5.5e-110 401.7 339 61.4
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.3e-108 397.1 337 60.5
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.3e-108 397.1 337 60.5
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.3e-108 397.1 337 60.5
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.9e-108 395.6 359 58.8
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 8.7e-108 394.4 350 59.1
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.5e-107 393.7 251 73.7
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.7e-107 391.7 312 65.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 9.7e-107 391.0 320 64.1
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 9.7e-107 391.0 329 62.3
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 9.7e-107 391.0 313 63.3
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 9.7e-107 391.0 336 59.5
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 1.6e-106 390.2 316 63.9
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.1e-105 385.6 314 63.7
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.5e-104 383.6 216 84.3
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 2.0e-104 383.3 337 59.6
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 2.6e-104 382.9 223 80.7
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.6e-101 372.5 314 61.5
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 5.1e-100 368.6 337 59.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 2.5e-99 366.3 284 64.4
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 6.3e-98 361.7 303 58.1
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-96 357.5 278 60.8
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 2.6e-96 356.3 392 52.8
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.0e-95 354.4 227 73.1
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.1e-94 350.9 340 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.4e-94 350.5 281 60.1
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 4.2e-94 349.0 279 59.1
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.6e-93 347.1 282 60.3
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.7e-90 337.0 287 62.0
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 1.1e-89 334.3 285 58.9
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 9.4e-86 321.2 288 60.8
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 5.7e-83 312.0 242 59.9
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 5.7e-83 312.0 337 53.4
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.1e-78 297.7 252 56.7
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.4e-76 290.8 252 56.3
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.8e-74 283.1 236 58.5
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.9e-70 270.4 230 63.9
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 1.4e-68 264.2 242 58.3
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.2e-67 261.2 236 61.0
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 3.4e-67 259.6 297 46.1
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 7.0e-65 251.9 177 68.4
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 3.5e-64 249.6 226 54.4
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 4.2e-62 242.7 238 55.9
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 3.9e-55 219.5 195 57.9
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.5e-54 217.6 231 48.1
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 6.8e-52 208.8 194 51.5
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.6e-45 186.4 119 75.6
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 1.4e-41 174.5 119 72.3
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 6.0e-40 169.1 189 47.6
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.0e-39 166.8 188 48.4
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.2e-37 161.4 102 78.4
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.7e-37 159.5 189 46.0
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 1.1e-36 158.3 100 76.0
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-36 157.9 188 46.8
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 6.8e-36 155.6 103 72.8
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.2e-35 154.8 85 84.7
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.6e-32 144.4 189 42.9
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.8e-32 142.1 184 44.0
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 5.1e-31 139.4 77 83.1
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.0e-27 127.5 189 38.1
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 4.4e-27 126.3 175 45.7
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.4e-27 126.3 180 37.2
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.4e-27 126.3 180 37.2
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 1.1e-25 121.7 87 66.7
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.1e-25 119.0 192 35.4
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.1e-25 119.0 139 45.3
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 8.7e-23 112.1 145 44.1
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-19 101.3 189 32.8
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 4.2e-17 93.2 192 29.2
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.3e-13 81.6 192 29.7
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 1.3e-10 71.6 67 53.7
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 4.2e-09 66.6 78 46.2
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.9e-08 62.4 97 36.1
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 1.0e-07 62.0 49 59.2


User provided reference genes

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