Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.0e-257 891.0 456 100.0
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.9e-243 845.5 513 87.7
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 1.7e-204 716.1 482 77.2
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 8.1e-194 680.6 493 72.0
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 9.3e-190 667.2 518 70.1
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 3.4e-176 622.1 513 64.9
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 1.9e-174 616.3 512 63.9
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.0e-172 610.5 513 63.4
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 3.9e-172 608.6 508 63.8
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 1.1e-171 607.1 508 64.0
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 4.5e-168 595.1 529 61.4
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.1e-166 590.5 509 61.5
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 1.6e-162 576.6 520 60.8
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 3.1e-161 572.4 522 60.7
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 3.1e-161 572.4 511 60.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.5e-158 562.8 513 59.6
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 7.2e-158 561.2 508 60.6
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.7e-157 559.3 513 60.0
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.3e-156 556.2 513 59.8
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 6.7e-156 554.7 509 59.1
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 8.8e-156 554.3 513 59.6
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.1e-155 553.9 513 59.5
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 4.4e-155 552.0 510 58.6
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.7e-154 550.1 513 59.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 1.7e-154 550.1 510 58.0
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 3.7e-154 548.9 513 58.1
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 4.8e-154 548.5 516 58.3
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 6.3e-154 548.1 513 57.3
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 4.1e-153 545.4 508 56.3
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.2e-152 543.9 508 58.3
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.0e-151 540.8 508 58.1
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 2.9e-151 539.3 507 56.0
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.4e-150 537.0 508 57.9
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 4.2e-150 535.4 494 58.5
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 2.7e-149 532.7 513 56.3
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 4.7e-149 531.9 497 58.4
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 3.9e-148 528.9 491 57.2
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 3.9e-148 528.9 507 56.4
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 9.7e-147 524.2 544 54.0
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 6.3e-146 521.5 506 56.7
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 1.8e-145 520.0 531 53.9
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 5.3e-145 518.5 526 53.8
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 2.6e-144 516.2 508 55.9
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 3.5e-144 515.8 529 54.3
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 1.7e-143 513.5 508 54.9
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 7.2e-142 508.1 488 55.3
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 7.2e-142 508.1 538 53.9
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 9.4e-142 507.7 511 55.4
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 1.6e-141 506.9 485 57.5
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.1e-141 506.5 512 54.7
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.1e-141 506.5 514 56.0
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 4.7e-141 505.4 513 54.0
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.4e-140 503.8 498 55.6
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.8e-140 503.4 508 55.3
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 2.3e-140 503.1 511 53.6
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.3e-140 503.1 514 55.8
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 5.2e-140 501.9 488 55.9
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 8.8e-140 501.1 488 56.4
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 8.8e-140 501.1 512 54.1
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.5e-139 500.4 436 61.0
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 2.6e-139 499.6 488 56.4
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 3.3e-139 499.2 507 54.0
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 6.3e-138 495.0 510 54.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 8.2e-138 494.6 512 52.9
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 2.4e-137 493.0 512 53.5
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 9.1e-137 491.1 519 53.0
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.2e-136 490.7 512 52.9
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 1.6e-136 490.3 512 53.5
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 2.7e-136 489.6 507 52.9
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.3e-135 487.3 516 53.7
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.7e-135 486.9 509 53.2
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.2e-134 482.6 515 52.4
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.6e-133 480.3 512 52.3
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 3.6e-133 479.2 510 52.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 4.7e-133 478.8 492 54.3
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.3e-132 476.5 495 52.9
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 3.0e-132 476.1 527 52.2
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 4.0e-132 475.7 525 51.4
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 6.8e-132 474.9 513 52.0
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.0e-131 473.4 512 51.0
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.3e-130 470.7 508 51.8
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 7.0e-129 464.9 568 48.2
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 8.6e-127 458.0 512 50.8
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 9.5e-126 454.5 514 50.4
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 1.6e-125 453.8 514 50.6
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.0e-123 446.8 515 49.3
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 7.5e-123 444.9 530 49.2
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 7.5e-123 444.9 512 50.6
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.7e-122 442.6 514 48.8
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 4.9e-122 442.2 529 48.2
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 4.1e-121 439.1 529 48.4
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.8e-119 432.6 427 56.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 6.6e-119 431.8 511 48.9
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 1.1e-118 431.0 519 48.9
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.6e-117 427.2 541 46.6
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.0e-116 424.5 528 47.3
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 6.4e-114 415.2 451 51.9
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.5e-110 404.1 473 49.9
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.3e-110 401.7 510 48.0
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.3e-110 401.7 510 48.0
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 8.0e-109 398.3 498 47.8
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.0e-107 393.7 523 45.1
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 6.4e-106 388.7 436 50.5
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 9.2e-105 384.8 449 49.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.5e-102 376.7 540 41.9
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.9e-97 360.5 471 46.3
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 3.3e-94 349.7 336 56.5
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 7.3e-94 348.6 439 49.7
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 8.7e-87 325.1 314 58.3
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 3.3e-86 323.2 354 51.1
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.4e-76 290.4 303 56.4
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 3.5e-72 276.6 442 42.1
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.3e-71 273.9 335 48.7
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.7e-66 257.7 267 52.8
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.7e-66 257.7 265 53.2
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 4.3e-62 243.0 506 33.4
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 7.6e-59 232.3 505 33.1
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.1e-55 219.5 364 37.9
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 9.0e-52 208.8 150 64.0
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 5.9e-51 206.1 290 47.9
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 2.2e-50 204.1 290 47.6
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 3.8e-50 203.4 159 62.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.6e-48 198.0 172 59.3
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 7.2e-41 172.6 176 53.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.8e-37 159.8 213 45.1
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 7.7e-27 125.9 211 36.0
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 1.5e-22 111.7 216 35.6
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 4.1e-20 103.6 218 31.2
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 7.7e-11 72.8 116 39.7
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 3.8e-10 70.5 313 27.5
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 3.3e-09 67.4 58 56.9
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.2e-08 65.5 149 33.6
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 8.0e-08 62.8 83 44.6


User provided reference genes

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