Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000721 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003891 8.5e-93 343.6 165 100.0
CSS0003979 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003891 4.7e-51 204.9 211 56.9
vmacro15903 Vaccinium macrocarpon HOM05D000688 ORTHO05D003891 2.6e-49 199.1 215 53.5
EL10Ac8g20379 Beta vulgaris HOM05D000688 ORTHO05D003891 9.8e-49 197.2 211 53.6
Hma1.2p1_1295F.1_g273910 Hydrangea macrophylla HOM05D000688 ORTHO05D003891 1.3e-48 196.8 210 54.3
AUR62017013 Chenopodium quinoa HOM05D000688 ORTHO05D003891 2.2e-48 196.1 211 53.1
Zm00001eb050350 Zea mays HOM05D000688 ORTHO05D003891 2.2e-48 196.1 212 53.3
TAR624G0154 Trochodendron aralioides HOM05D000688 ORTHO05D003891 2.9e-48 195.7 211 53.1
vmacro12301 Vaccinium macrocarpon HOM05D000688 ORTHO05D003891 2.9e-48 195.7 211 54.5
PSO210G4503 Papaver somniferum HOM05D000688 ORTHO05D003891 3.7e-48 195.3 211 53.1
PSO832G3847 Papaver somniferum HOM05D000688 ORTHO05D003891 3.7e-48 195.3 211 53.1
Dinv26418 Davidia involucrata HOM05D000688 ORTHO05D003891 4.9e-48 194.9 211 54.5
Hund21226 Selenicereus undatus HOM05D000688 ORTHO05D003891 4.9e-48 194.9 211 54.0
Hund23734 Selenicereus undatus HOM05D000688 ORTHO05D003891 4.9e-48 194.9 211 54.0
Ah.09g237340 Amaranthus hybridus HOM05D000688 ORTHO05D003891 6.4e-48 194.5 211 52.6
CDE05G0635 Ceratophyllum demersum HOM05D000688 ORTHO05D003891 6.4e-48 194.5 211 53.6
CDE11G0080 Ceratophyllum demersum HOM05D000688 ORTHO05D003891 6.4e-48 194.5 211 53.6
AUR62014817 Chenopodium quinoa HOM05D000688 ORTHO05D003891 6.4e-48 194.5 211 52.6
PGR042G1062 Punica granatum HOM05D000688 ORTHO05D003891 6.4e-48 194.5 211 53.6
Nn1g06567 Nelumbo nucifera HOM05D000688 ORTHO05D003891 8.3e-48 194.1 211 53.6
arahy.Tifrunner.gnm1.ann1.GL1MLB Arachis hypogaea HOM05D000688 ORTHO05D003891 1.1e-47 193.7 211 53.6
arahy.Tifrunner.gnm1.ann1.NAU6LA Arachis hypogaea HOM05D000688 ORTHO05D003891 1.1e-47 193.7 211 53.6
THA.LOC104812869 Tarenaya hassleriana HOM05D000688 ORTHO05D003891 1.1e-47 193.7 211 52.1
Zm00001eb218650 Zea mays HOM05D000688 ORTHO05D003891 1.1e-47 193.7 211 53.6
CSS0012596 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003891 1.4e-47 193.4 211 53.1
MD05G1313100 Malus domestica HOM05D000688 ORTHO05D003891 1.4e-47 193.4 212 54.2
MD10G1295300 Malus domestica HOM05D000688 ORTHO05D003891 1.4e-47 193.4 212 54.2
Manes.16G027100 Manihot esculenta HOM05D000688 ORTHO05D003891 1.4e-47 193.4 211 53.1
Phvul.006G185800 Phaseolus vulgaris HOM05D000688 ORTHO05D003891 1.4e-47 193.4 211 53.1
Potri.004G043200 Populus trichocarpa HOM05D000688 ORTHO05D003891 1.4e-47 193.4 211 53.1
VMungo0540G1699 Vigna mungo HOM05D000688 ORTHO05D003891 1.4e-47 193.4 211 53.1
Cc02_g13320 Coffea canephora HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.1
Migut.H01489 Erythranthe guttata HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.6
Thhalv10024251m.g Eutrema salsugineum HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 51.7
Gohir.A06G210100 Gossypium hirsutum HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.1
Gohir.D06G210900 Gossypium hirsutum HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.1
Gorai.010G255400 Gossypium raimondii HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.1
Lj6g0001113 Lotus japonicus HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 52.1
Oeu064778.1 Olea europaea HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.1
Phvul.009G230400 Phaseolus vulgaris HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.6
GSVIVG01020543001 Vitis vinifera HOM05D000688 ORTHO05D003891 1.9e-47 193.0 211 53.1
Glyma.09G066000 Glycine max HOM05D000688 ORTHO05D003891 2.4e-47 192.6 211 53.1
Nitab4.5_0003432g0020 Nicotiana tabacum HOM05D000688 ORTHO05D003891 2.4e-47 192.6 211 53.6
Nitab4.5_0007940g0010 Nicotiana tabacum HOM05D000688 ORTHO05D003891 2.4e-47 192.6 211 53.6
Actinidia01884 Actinidia chinensis HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 52.6
MSTRG.13196 Avicennia marina HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 53.1
DCAR_004076 Daucus carota HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 52.6
Dinv07557 Davidia involucrata HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 52.6
Lj2A288T66 Lonicera japonica HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 53.1
Rhsim02G0128600 Rhododendron simsii HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 52.6
Rhsim06G0142300 Rhododendron simsii HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 53.6
Sabra04G0026800 Salix brachista HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 52.6
Solyc02g078260.3 Solanum lycopersicum HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 53.1
Sopen02g023120 Solanum pennellii HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 53.1
PGSC0003DMG400029721 Solanum tuberosum HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 53.1
THA.LOC104806288 Tarenaya hassleriana HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 51.7
TAR626G0729 Trochodendron aralioides HOM05D000688 ORTHO05D003891 3.2e-47 192.2 211 52.1
ATR0737G182 Amborella trichopoda HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 52.6
Cfa000445 Carpinus fangiana HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 52.6
Ca_13395_v3 Cicer arietinum L. HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 52.6
ClCG01G022970 Citrullus lanatus HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 53.1
COL.COLO4_31478 Corchorus olitorius HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 52.6
MELO3C007284.2 Cucumis melo HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 53.1
CsaV3_6G050130 Cucumis sativus L. HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 53.1
Duzib192G0348 Durio zibethinus HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 52.6
SHI01731 Sapria himalayana HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 54.0
SMO137G0267 Selaginella moellendorffii HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 52.6
Thecc.06G188300 Theobroma cacao HOM05D000688 ORTHO05D003891 4.1e-47 191.8 211 52.6
Aa31LG6G3690 Aethionema arabicum HOM05D000688 ORTHO05D003891 5.4e-47 191.4 211 50.7
Lalb_Chr18g0059641 Lupinus albus HOM05D000688 ORTHO05D003891 5.4e-47 191.4 211 52.6
Lalb_Chr20g0121921 Lupinus albus HOM05D000688 ORTHO05D003891 5.4e-47 191.4 211 52.6
Oeu005078.2 Olea europaea HOM05D000688 ORTHO05D003891 5.4e-47 191.4 211 52.6
Prupe.4G046700 Prunus persica HOM05D000688 ORTHO05D003891 5.4e-47 191.4 211 52.6
QL05p040208 Quercus lobata HOM05D000688 ORTHO05D003891 5.4e-47 191.4 211 52.6
CAN.G1164.28 Capsicum annuum HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 52.6
CARHR228440 Cardamine hirsuta HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 51.2
Hma1.2p1_0785F.1_g217570 Hydrangea macrophylla HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 52.6
Peaxi162Scf00661g00520 Petunia axillaris HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 52.6
Psat6g005080 Pisum sativum HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 52.1
SalBow7G3779 Salvia bowleyana HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 52.6
Sp7g19860 Schrenkiella parvula HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 50.7
unitig_26.g9362 Utricularia gibba HOM05D000688 ORTHO05D003891 7.1e-47 191.0 211 53.1
BcaC09g51213 Brassica carinata HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 50.7
A01p13030 Brassica napus HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 50.7
C01p15700 Brassica napus HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 50.7
BolC1t01523H Brassica oleracea HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 50.7
BraA01t01245Z Brassica rapa HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 50.7
Carub.0007s1969 Capsella rubella HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 50.7
Glyma.15G172100 Glycine max HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 52.6
Medtr1g023500 Medicago truncatula HOM05D000688 ORTHO05D003891 9.2e-47 190.7 211 52.1
Actinidia05632 Actinidia chinensis HOM05D000688 ORTHO05D003891 1.2e-46 190.3 211 52.1
AL7G32230 Arabidopsis lyrata HOM05D000688 ORTHO05D003891 1.2e-46 190.3 211 51.2
Ciclev10027701m.g Citrus clementina HOM05D000688 ORTHO05D003891 1.2e-46 190.3 211 52.6
Sc17g0006210 Simmondsia chinensis HOM05D000688 ORTHO05D003891 1.2e-46 190.3 211 52.1
TWI63G0555 Tripterygium wilfordii HOM05D000688 ORTHO05D003891 1.2e-46 190.3 211 52.1
Cc05_g07140 Coffea canephora HOM05D000688 ORTHO05D003891 1.6e-46 189.9 211 52.1
ECA236G3242 Erigeron canadensis HOM05D000688 ORTHO05D003891 1.6e-46 189.9 211 51.7
Eucgr.E03313 Eucalyptus grandis HOM05D000688 ORTHO05D003891 1.6e-46 189.9 211 52.6
RcHm_v2.0_Chr5g0008301 Rosa chinensis HOM05D000688 ORTHO05D003891 2.1e-46 189.5 211 52.1
TPR.G34361 Trifolium pratense HOM05D000688 ORTHO05D003891 2.1e-46 189.5 211 51.7
Atru.chr11.1223 Acer truncatum HOM05D000688 ORTHO05D003891 2.7e-46 189.1 211 52.1
Cpa.g.sc27.44 Carica papaya HOM05D000688 ORTHO05D003891 3.5e-46 188.7 211 52.1
CiPaw.09G059500 Carya illinoinensis HOM05D000688 ORTHO05D003891 4.6e-46 188.3 211 51.7
HanXRQChr04g0124051 Helianthus annuus HOM05D000688 ORTHO05D003891 4.6e-46 188.3 211 51.2
HanXRQChr15g0482411 Helianthus annuus HOM05D000688 ORTHO05D003891 4.6e-46 188.3 211 51.2
Sed0007750 Sechium edule HOM05D000688 ORTHO05D003891 4.6e-46 188.3 211 52.1
SGA_v2.0_scaffold159G37644 Striga asiatica HOM05D000688 ORTHO05D003891 4.6e-46 188.3 211 51.7
Lsat_1_v5_gn_7_21221 Lactuca sativa HOM05D000688 ORTHO05D003891 6.0e-46 188.0 211 52.1
Pp3c2_10910 Physcomitrium patens HOM05D000688 ORTHO05D003891 6.0e-46 188.0 211 50.7
TPR.G6631 Trifolium pratense HOM05D000688 ORTHO05D003891 6.0e-46 188.0 211 51.7
Mapoly0101s0062 Marchantia polymorpha HOM05D000688 ORTHO05D003891 7.8e-46 187.6 211 51.2
AT4G21710 Arabidopsis thaliana HOM05D000688 ORTHO05D003891 1.0e-45 187.2 211 50.2
CANSAT35G0904 Cannabis sativa HOM05D000688 ORTHO05D003891 1.3e-45 186.8 211 51.7
Aqoxy4G00850 Aquilegia oxysepala HOM05D000688 ORTHO05D003891 1.7e-45 186.4 211 51.2
BcaB02g09516 Brassica carinata HOM05D000688 ORTHO05D003891 1.7e-45 186.4 212 50.5
FvH4_3g09270 Fragaria vesca HOM05D000688 ORTHO05D003891 1.7e-45 186.4 211 51.2
FAN11G0358 Fragaria x ananassa HOM05D000688 ORTHO05D003891 1.7e-45 186.4 211 51.2
FAN16G3497 Fragaria x ananassa HOM05D000688 ORTHO05D003891 1.7e-45 186.4 211 51.2
FAN21G2802 Fragaria x ananassa HOM05D000688 ORTHO05D003891 1.7e-45 186.4 211 51.2
FAN25G1703 Fragaria x ananassa HOM05D000688 ORTHO05D003891 1.7e-45 186.4 211 51.2
CAN.G318.1 Capsicum annuum HOM05D000688 ORTHO05D003891 3.9e-45 185.3 210 51.4
Solyc12g010600.3 Solanum lycopersicum HOM05D000688 ORTHO05D003891 5.1e-45 184.9 210 51.4
Sopen12g005620 Solanum pennellii HOM05D000688 ORTHO05D003891 5.1e-45 184.9 210 51.4
BcaNung02240 Brassica carinata HOM05D000688 ORTHO05D003891 8.6e-45 184.1 211 49.3
Sed0011517 Sechium edule HOM05D000688 ORTHO05D003891 8.6e-45 184.1 211 50.7
BcaC02g12516 Brassica carinata HOM05D000688 ORTHO05D003891 5.6e-44 181.4 211 48.8
C04p01740 Brassica napus HOM05D000688 ORTHO05D003891 5.6e-44 181.4 211 48.8
BolC4t21826H Brassica oleracea HOM05D000688 ORTHO05D003891 5.6e-44 181.4 211 48.8
Migut.M00297 Erythranthe guttata HOM05D000688 ORTHO05D003891 5.6e-44 181.4 211 50.2
A03p52880 Brassica napus HOM05D000688 ORTHO05D003891 7.3e-44 181.0 213 48.8
BraA03t14364Z Brassica rapa HOM05D000688 ORTHO05D003891 7.3e-44 181.0 213 48.8
Nitab4.5_0006194g0070 Nicotiana tabacum HOM05D000688 ORTHO05D003891 7.3e-44 181.0 211 49.8
Peaxi162Scf00008g00818 Petunia axillaris HOM05D000688 ORTHO05D003891 1.2e-43 180.3 210 49.5
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 1.6e-43 179.9 211 49.8
Nitab4.5_0006627g0030 Nicotiana tabacum HOM05D000688 ORTHO05D003891 2.1e-43 179.5 210 50.0
Hma1.2p1_1038F.1_g250690 Hydrangea macrophylla HOM05D000688 ORTHO05D003891 4.7e-43 178.3 201 52.2
SEGI_37407 Sequoiadendron giganteum HOM05D000688 ORTHO05D003891 4.7e-43 178.3 211 50.7
Lsat_1_v5_gn_7_21201 Lactuca sativa HOM05D000688 ORTHO05D003891 1.1e-42 177.2 211 49.3
A08p15430 Brassica napus HOM05D000688 ORTHO05D003891 1.8e-42 176.4 209 49.8
BraA08t33520Z Brassica rapa HOM05D000688 ORTHO05D003891 3.1e-42 175.6 209 49.3
CBR_g49614 Chara braunii HOM05D000688 ORTHO05D003891 4.0e-42 175.3 211 46.0
SalBow7G4708 Salvia bowleyana HOM05D000688 ORTHO05D003891 4.0e-42 175.3 211 48.8
AagrBONN_evm.TU.Sc2ySwM_362.381 Anthoceros agrestis HOM05D000688 ORTHO05D003891 6.8e-42 174.5 211 48.8
BraA08t33480Z Brassica rapa HOM05D000688 ORTHO05D003891 6.8e-42 174.5 209 49.3
AagrBONN_evm.TU.Sc2ySwM_362.366 Anthoceros agrestis HOM05D000688 ORTHO05D003891 1.2e-41 173.7 211 48.8
BcaC01g00737 Brassica carinata HOM05D000688 ORTHO05D003891 1.2e-41 173.7 209 49.8
C03p83690 Brassica napus HOM05D000688 ORTHO05D003891 1.2e-41 173.7 209 49.8
BolC3t20588H Brassica oleracea HOM05D000688 ORTHO05D003891 1.2e-41 173.7 209 49.8
BcaB03g11712 Brassica carinata HOM05D000688 ORTHO05D003891 4.4e-41 171.8 209 49.8
BolC3t20648H Brassica oleracea HOM05D000688 ORTHO05D003891 1.9e-39 166.4 209 49.3
MBI16_g05843_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D003891 7.8e-38 161.0 217 45.6
MCO09G805 Micromonas commoda HOM05D000688 ORTHO05D003891 1.3e-37 160.2 209 45.0
BcaC01g00682 Brassica carinata HOM05D000688 ORTHO05D003891 2.3e-37 159.5 212 47.2
AagrBONN_evm.TU.Sc2ySwM_344.461 Anthoceros agrestis HOM05D000688 ORTHO05D003891 5.1e-37 158.3 211 44.5
SGA_v2.0_scaffold70G23467 Striga asiatica HOM05D000688 ORTHO05D003891 6.6e-37 157.9 184 49.5
PRCOL_00001694 Prasinoderma coloniale HOM05D000688 ORTHO05D003891 2.5e-36 156.0 211 45.0
CBR_g45284 Chara braunii HOM05D000688 ORTHO05D003891 9.6e-36 154.1 219 42.5
Haze_06470 Corylus avellana HOM05D000688 ORTHO05D003891 9.6e-36 154.1 92 80.4
Peaxi162Scf00661g00526 Petunia axillaris HOM05D000688 ORTHO05D003891 1.2e-35 153.7 215 44.2
HPP92_007278 Vanilla planifolia HOM05D000688 ORTHO05D003891 3.6e-35 152.1 92 79.3
Glyma.15G073832 Glycine max HOM05D000688 ORTHO05D003891 1.4e-34 150.2 193 45.6
TPR.G15359 Trifolium pratense HOM05D000688 ORTHO05D003891 1.8e-34 149.8 195 45.6
Lsat_1_v5_gn_7_21181 Lactuca sativa HOM05D000688 ORTHO05D003891 2.6e-33 146.0 92 75.0
Haze_26872 Corylus avellana HOM05D000688 ORTHO05D003891 7.6e-33 144.4 212 39.6
BcaB03g11682 Brassica carinata HOM05D000688 ORTHO05D003891 8.4e-32 141.0 209 44.5
BolC4t21841H Brassica oleracea HOM05D000688 ORTHO05D003891 2.8e-27 125.9 167 46.7
VMungo1309G0707 Vigna mungo HOM05D000688 ORTHO05D003891 3.2e-23 112.5 160 45.6
Cre02.g075150 Chlamydomonas reinhardtii HOM05D000688 ORTHO05D003891 7.1e-23 111.3 211 33.2
HanXRQChr15g0482421 Helianthus annuus HOM05D000688 ORTHO05D003891 3.0e-21 105.9 162 42.0
AagrBONN_evm.TU.Sc2ySwM_344.446 Anthoceros agrestis HOM05D000688 ORTHO05D003891 3.9e-21 105.5 181 42.5
Cfa023085 Carpinus fangiana HOM05D000688 ORTHO05D003891 6.7e-21 104.8 107 50.5
ATR0737G155 Amborella trichopoda HOM05D000688 ORTHO05D003891 1.1e-20 104.0 147 42.2
AagrBONN_evm.TU.Sc2ySwM_344.491 Anthoceros agrestis HOM05D000688 ORTHO05D003891 1.1e-18 97.4 211 33.6
VMungo1309G0724 Vigna mungo HOM05D000688 ORTHO05D003891 3.2e-15 85.9 52 76.9
BolC4t21829H Brassica oleracea HOM05D000688 ORTHO05D003891 2.1e-14 83.2 70 64.3
CAN.G960.34 Capsicum annuum HOM05D000688 ORTHO05D003888 1.4e-07 60.5 122 32.0
unitig_22.g5333 Utricularia gibba HOM05D000688 ORTHO05D003888 3.2e-07 59.3 113 31.0
AUR62036901 Chenopodium quinoa HOM05D000688 ORTHO05D003888 7.1e-07 58.2 119 31.1
AagrBONN_evm.TU.Sc2ySwM_344.1343 Anthoceros agrestis HOM05D000688 ORTHO05D003888 1.6e-06 57.0 191 24.6
CAN.G960.6 Capsicum annuum HOM05D000688 ORTHO05D003888 1.6e-06 57.0 115 29.6
Mapoly0097s0027 Marchantia polymorpha HOM05D000688 ORTHO05D003888 2.1e-06 56.6 189 25.9
AUR62013825 Chenopodium quinoa HOM05D000688 ORTHO05D003888 2.7e-06 56.2 179 26.8


User provided reference genes

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