Gene: vmacro15903
General Information
Structural Information
- Species Vaccinium macrocarpon
- Gene Identifier vmacro15903
- Transcript Identifier vmacro15903-RA
- Gene Type Coding gene
- Location chr4_Vaccinium_macrocarpon_Stevens_v1 : 24110305-24121558 : positive
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D003891
- #Genes/#Species 200/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id vmacro15903_Vaccinium_macrocarpon_Stevens_v1
Descriptions
- Description Similar to RPB2: DNA-directed RNA polymerase II subunit RPB2 (Solanum lycopersicum OX=4081)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT4G21710 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G21710 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G21710 |
| GO:0005665 | ISO | PLAZA Integrative Orthology | RNA polymerase II, core complex | AT4G21710 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007647 | RNA polymerase Rpb2, domain 5 |
| IPR007641 | RNA polymerase Rpb2, domain 7 |
| IPR007646 | RNA polymerase Rpb2, domain 4 |
| IPR014724 | RNA polymerase Rpb2, OB-fold |
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| Mapman id | Description |
|---|---|
| 15.1.2.2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 2 |