Gene: AT4G21710

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G21710
  • Transcript Identifier AT4G21710.1
  • Gene Type Coding gene
  • Location Chr4 : 11535684-11542200 : negative

Gene Family Information

  • ID HOM05D000688
  • #Genes/#Species 832/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G21710.1
  • symbol NRPB2
  • uniprot P38420

Descriptions

  • Description DNA-directed RNA polymerase family protein
  • Computational description NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0035196
IMP
Gene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032549
IEA
Gene Ontologyribonucleoside binding
GO:0032549
IEA
InterProribonucleoside binding
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
ISS, IBA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity2 3
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005665
IDA, IPI
ISS, IBA
Gene OntologyRNA polymerase II, core complex2 3 4
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma5
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007645 RNA polymerase Rpb2, domain 3
IPR007642 RNA polymerase Rpb2, domain 2
IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR014724 RNA polymerase Rpb2, OB-fold
IPR007647 RNA polymerase Rpb2, domain 5
IPR015712 DNA-directed RNA polymerase, subunit 2
IPR007646 RNA polymerase Rpb2, domain 4
IPR007641 RNA polymerase Rpb2, domain 7
IPR007644 RNA polymerase, beta subunit, protrusion
IPR037034 RNA polymerase Rpb2, domain 2 superfamily
IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily
Mapman id Description
15.1.2.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic components.subunit 2