Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000320 Camellia sinensis var. sinensis HOM05D005263 ORTHO05D006891 4.0e-37 157.5 77 100.0
CSS0004230 Camellia sinensis var. sinensis HOM05D005263 ORTHO05D006891 4.0e-37 157.5 77 100.0
FAN09G1249 Fragaria x ananassa HOM05D005263 ORTHO05D006891 4.8e-14 80.9 48 81.2
Actinidia36248 Actinidia chinensis HOM05D005263 ORTHO05D006891 6.3e-14 80.5 47 85.1
Dinv33264 Davidia involucrata HOM05D005263 ORTHO05D006891 6.3e-14 80.5 47 85.1
Hma1.2p1_0265F.1_g106760 Hydrangea macrophylla HOM05D005263 ORTHO05D006891 6.3e-14 80.5 47 85.1
Hma1.2p1_0265F.1_g106770 Hydrangea macrophylla HOM05D005263 ORTHO05D006891 6.3e-14 80.5 47 85.1
PGR142G1885 Punica granatum HOM05D005263 ORTHO05D006891 6.3e-14 80.5 47 85.1
Actinidia05377 Actinidia chinensis HOM05D005263 ORTHO05D006891 8.2e-14 80.1 47 85.1
FvH4_6g54430 Fragaria vesca HOM05D005263 ORTHO05D006891 1.1e-13 79.7 47 83.0
FAN02G2182 Fragaria x ananassa HOM05D005263 ORTHO05D006891 1.1e-13 79.7 47 83.0
FAN05G5194 Fragaria x ananassa HOM05D005263 ORTHO05D006891 1.1e-13 79.7 47 83.0
FAN14G4399 Fragaria x ananassa HOM05D005263 ORTHO05D006891 1.1e-13 79.7 47 83.0
Haze_14959 Corylus avellana HOM05D005263 ORTHO05D006891 1.8e-13 79.0 47 83.0
MSTRG.3034 Avicennia marina HOM05D005263 ORTHO05D006891 2.4e-13 78.6 47 83.0
CSS0005310 Camellia sinensis var. sinensis HOM05D005263 ORTHO05D006891 2.4e-13 78.6 49 77.6
CANSAT64G2729 Cannabis sativa HOM05D005263 ORTHO05D006891 2.4e-13 78.6 47 83.0
Manes.11G073900 Manihot esculenta HOM05D005263 ORTHO05D006891 2.4e-13 78.6 47 83.0
Potri.014G145000 Populus trichocarpa HOM05D005263 ORTHO05D006891 2.4e-13 78.6 47 80.9
QL02p068698 Quercus lobata HOM05D005263 ORTHO05D006891 2.4e-13 78.6 47 83.0
Hund04127 Selenicereus undatus HOM05D005263 ORTHO05D006891 2.4e-13 78.6 47 80.9
GSVIVG01032955001 Vitis vinifera HOM05D005263 ORTHO05D006891 2.4e-13 78.6 47 80.9
Potri.002G237400 Populus trichocarpa HOM05D005263 ORTHO05D006891 3.1e-13 78.2 47 80.9
Sabra02G0180900 Salix brachista HOM05D005263 ORTHO05D006891 3.1e-13 78.2 47 80.9
Ciclev10017439m.g Citrus clementina HOM05D005263 ORTHO05D006891 4.1e-13 77.8 47 80.9
CiPaw.03G000200 Carya illinoinensis HOM05D005263 ORTHO05D006891 5.3e-13 77.4 47 80.9
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 5.3e-13 77.4 47 80.9
Eucgr.I01574 Eucalyptus grandis HOM05D005263 ORTHO05D006891 5.3e-13 77.4 47 80.9
Atru.chr6.2720 Acer truncatum HOM05D005263 ORTHO05D006891 6.9e-13 77.0 47 80.9
RcHm_v2.0_Chr2g0176681 Rosa chinensis HOM05D005263 ORTHO05D006891 6.9e-13 77.0 47 78.7
Lj1g0009319 Lotus japonicus HOM05D005263 ORTHO05D006891 9.1e-13 76.6 47 78.7
Rhsim10G0000700 Rhododendron simsii HOM05D005263 ORTHO05D006891 9.1e-13 76.6 47 76.6
Cc07_g01440 Coffea canephora HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
Cc08_g07670 Coffea canephora HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
DCAR_000962 Daucus carota HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
Gohir.A09G000037 Gossypium hirsutum HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
Gohir.D09G000101 Gossypium hirsutum HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
Gorai.006G000100 Gossypium raimondii HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
MD17G1004500 Malus domestica HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
Prupe.3G314900 Prunus persica HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
Sabra14G0109200 Salix brachista HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
TWI60G0166 Tripterygium wilfordii HOM05D005263 ORTHO05D006891 1.2e-12 76.3 47 78.7
CARHR074870 Cardamine hirsuta HOM05D005263 ORTHO05D006891 1.5e-12 75.9 47 74.5
PSO017G0637 Papaver somniferum HOM05D005263 ORTHO05D006891 1.5e-12 75.9 47 74.5
PSO478G0722 Papaver somniferum HOM05D005263 ORTHO05D006891 1.5e-12 75.9 47 74.5
Solyc02g094590.3 Solanum lycopersicum HOM05D005263 ORTHO05D006891 1.5e-12 75.9 47 78.7
Sopen02g039240 Solanum pennellii HOM05D005263 ORTHO05D006891 1.5e-12 75.9 47 78.7
Thecc.04G050600 Theobroma cacao HOM05D005263 ORTHO05D006891 1.5e-12 75.9 47 78.7
arahy.Tifrunner.gnm1.ann1.J2Y82Q Arachis hypogaea HOM05D005263 ORTHO05D006891 2.0e-12 75.5 47 76.6
arahy.Tifrunner.gnm1.ann1.R16MRH Arachis hypogaea HOM05D005263 ORTHO05D006891 2.0e-12 75.5 47 76.6
Cpa.g.sc70.43 Carica papaya HOM05D005263 ORTHO05D006891 2.0e-12 75.5 47 80.9
Lj7C619G12 Lonicera japonica HOM05D005263 ORTHO05D006891 2.0e-12 75.5 47 78.7
Aqoxy5G03006 Aquilegia oxysepala HOM05D005263 ORTHO05D006891 3.4e-12 74.7 47 76.6
AL3G10030 Arabidopsis lyrata HOM05D005263 ORTHO05D006891 3.4e-12 74.7 47 76.6
AT3G02060 Arabidopsis thaliana HOM05D005263 ORTHO05D006891 3.4e-12 74.7 47 76.6
Carub.0003s0003 Capsella rubella HOM05D005263 ORTHO05D006891 3.4e-12 74.7 47 76.6
Migut.F00003 Erythranthe guttata HOM05D005263 ORTHO05D006891 3.4e-12 74.7 47 76.6
Thhalv10020076m.g Eutrema salsugineum HOM05D005263 ORTHO05D006891 3.4e-12 74.7 47 76.6
SGA_v2.0_scaffold122G33171 Striga asiatica HOM05D005263 ORTHO05D006891 3.4e-12 74.7 47 76.6
EL10Ac6g13898 Beta vulgaris HOM05D005263 ORTHO05D006891 4.5e-12 74.3 47 76.6
Nn4g22084 Nelumbo nucifera HOM05D005263 ORTHO05D006891 4.5e-12 74.3 47 76.6
unitig_52.g17690 Utricularia gibba HOM05D005263 ORTHO05D006891 4.5e-12 74.3 47 76.6
Medtr7g084560 Medicago truncatula HOM05D005263 ORTHO05D006891 5.9e-12 73.9 47 76.6
Nitab4.5_0000519g0290 Nicotiana tabacum HOM05D005263 ORTHO05D006891 5.9e-12 73.9 47 74.5
Nitab4.5_0002901g0080 Nicotiana tabacum HOM05D005263 ORTHO05D006891 5.9e-12 73.9 47 76.6
vmacro22255 Vaccinium macrocarpon HOM05D005263 ORTHO05D006891 5.9e-12 73.9 47 76.6
CAN.G473.163 Capsicum annuum HOM05D005263 ORTHO05D006891 7.7e-12 73.6 47 76.6
AUR62017472 Chenopodium quinoa HOM05D005263 ORTHO05D006891 7.7e-12 73.6 47 76.6
Glyma.16G046000 Glycine max HOM05D005263 ORTHO05D006891 7.7e-12 73.6 47 72.3
Gohir.A09G000300 Gossypium hirsutum HOM05D005263 ORTHO05D006891 7.7e-12 73.6 47 76.6
SalBow4G2620 Salvia bowleyana HOM05D005263 ORTHO05D006891 7.7e-12 73.6 47 76.6
SGA_v2.0_scaffold274G46524 Striga asiatica HOM05D005263 ORTHO05D006891 7.7e-12 73.6 47 74.5
BcaNung05596 Brassica carinata HOM05D005263 ORTHO05D006891 1.0e-11 73.2 47 74.5
Glyma.19G106000 Glycine max HOM05D005263 ORTHO05D006891 1.0e-11 73.2 47 72.3
BcaNung05595 Brassica carinata HOM05D005263 ORTHO05D006891 1.3e-11 72.8 47 74.5
Phvul.001G099500 Phaseolus vulgaris HOM05D005263 ORTHO05D006891 1.3e-11 72.8 47 74.5
HPP92_009750 Vanilla planifolia HOM05D005263 ORTHO05D006891 1.3e-11 72.8 47 74.5
HPP92_009765 Vanilla planifolia HOM05D005263 ORTHO05D006891 1.3e-11 72.8 47 74.5
ClCG01G007920 Citrullus lanatus HOM05D005263 ORTHO05D006891 1.7e-11 72.4 47 74.5
CsaV3_5G021940 Cucumis sativus L. HOM05D005263 ORTHO05D006891 1.7e-11 72.4 47 74.5
Sed0001423 Sechium edule HOM05D005263 ORTHO05D006891 1.7e-11 72.4 47 74.5
MELO3C005086.2 Cucumis melo HOM05D005263 ORTHO05D006891 2.2e-11 72.0 47 74.5
TAR622G0136 Trochodendron aralioides HOM05D005263 ORTHO05D006891 2.2e-11 72.0 47 74.5
ATR0582G042 Amborella trichopoda HOM05D005263 ORTHO05D006891 2.9e-11 71.6 47 74.5
Ca_08228_v3 Cicer arietinum L. HOM05D005263 ORTHO05D006891 2.9e-11 71.6 47 72.3
HanXRQChr14g0451541 Helianthus annuus HOM05D005263 ORTHO05D006891 2.9e-11 71.6 53 67.9
BcaC01g05768 Brassica carinata HOM05D005263 ORTHO05D006891 3.8e-11 71.2 47 72.3
TPR.G26435 Trifolium pratense HOM05D005263 ORTHO05D006891 3.8e-11 71.2 47 74.5
Sp3g00030 Schrenkiella parvula HOM05D005263 ORTHO05D006891 5.0e-11 70.9 47 72.3
Duzib147G0290 Durio zibethinus HOM05D005263 ORTHO05D006891 6.5e-11 70.5 47 76.6
Sc07g0003930 Simmondsia chinensis HOM05D005263 ORTHO05D006891 6.5e-11 70.5 47 72.3
Lalb_Chr14g0363581 Lupinus albus HOM05D005263 ORTHO05D006891 1.4e-10 69.3 47 70.2
Aa31LG5G11240 Aethionema arabicum HOM05D005263 ORTHO05D006891 2.5e-10 68.6 47 70.2
Psat3g091960 Pisum sativum HOM05D005263 ORTHO05D006891 3.2e-10 68.2 47 70.2
THA.LOC104821142 Tarenaya hassleriana HOM05D005263 ORTHO05D006891 7.2e-10 67.0 47 68.1
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 1.2e-09 66.2 53 64.2
SEGI_39668 Sequoiadendron giganteum HOM05D005263 ORTHO05D006891 1.2e-09 66.2 46 71.7
ECA238G3309 Erigeron canadensis HOM05D005263 ORTHO05D006891 1.6e-09 65.9 53 64.2
Peaxi162Scf00420g00940 Petunia axillaris HOM05D005263 ORTHO05D006891 6.1e-09 63.9 76 51.3
Zm00001eb113530 Zea mays HOM05D005263 ORTHO05D006891 8.8e-08 60.1 46 58.7
SMO364G0436 Selaginella moellendorffii HOM05D005263 ORTHO05D006891 1.1e-07 59.7 49 55.1
Mapoly0015s0011 Marchantia polymorpha HOM05D005263 ORTHO05D006891 4.4e-07 57.8 47 55.3
QL02p068621 Quercus lobata HOM05D005263 ORTHO05D006891 4.4e-07 57.8 38 73.7
AagrBONN_evm.TU.Sc2ySwM_117.63 Anthoceros agrestis HOM05D005263 ORTHO05D006891 9.7e-07 56.6 46 56.5
CBR_g56393 Chara braunii HOM05D000409 ORTHO05D000184 1.3e-06 56.2 47 57.4


User provided reference genes

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