Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 7.9e-132 473.8 238 100.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 4.4e-98 361.7 215 82.8
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 2.9e-94 349.0 228 78.1
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.1e-88 328.6 216 75.5
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 4.1e-88 328.6 216 75.5
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-87 326.6 216 75.5
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 2.0e-87 326.2 217 75.1
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-87 325.5 216 74.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-87 325.5 216 74.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-87 325.5 216 74.5
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-86 323.6 216 74.1
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-86 323.6 216 74.1
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-86 323.6 216 74.1
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-86 322.4 216 74.1
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-86 321.6 216 73.6
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.5e-85 319.3 217 72.4
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 3.6e-84 315.5 218 71.6
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.4e-83 313.5 217 72.4
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 3.0e-83 312.4 217 72.4
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 8.8e-83 310.8 216 71.8
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 8.8e-83 310.8 217 69.6
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 7.5e-82 307.8 216 71.8
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 3.7e-81 305.4 233 67.8
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 8.2e-81 304.3 216 69.4
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.1e-80 302.4 218 69.3
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 2.7e-79 299.3 218 69.3
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 3.5e-79 298.9 216 69.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 4.5e-79 298.5 222 67.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 4.5e-79 298.5 220 68.2
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.0e-78 297.4 216 69.0
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 2.2e-78 296.2 217 70.5
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 5.0e-78 295.0 216 69.0
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 2.5e-77 292.7 222 66.2
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 4.2e-77 292.0 222 66.2
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 5.5e-77 291.6 222 65.8
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 7.2e-77 291.2 222 66.7
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.2e-76 290.4 222 64.9
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.7e-76 289.3 222 67.1
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 2.7e-76 289.3 220 65.9
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 4.7e-76 288.5 224 67.9
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.0e-75 287.3 222 64.4
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.0e-75 287.3 216 69.0
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 4.0e-75 285.4 223 66.4
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 4.0e-75 285.4 222 65.8
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 5.2e-75 285.0 215 67.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 5.2e-75 285.0 218 68.8
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 5.2e-75 285.0 217 67.3
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 8.8e-75 284.3 221 66.1
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.2e-74 283.9 218 67.0
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.5e-74 283.5 217 66.8
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.0e-74 283.1 215 67.4
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 2.6e-74 282.7 221 64.3
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 3.4e-74 282.3 219 64.8
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.3e-73 280.4 221 63.8
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-72 277.3 197 72.1
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.8e-72 276.6 216 68.1
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.4e-72 276.2 224 64.3
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 3.1e-72 275.8 219 64.4
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 7.0e-72 274.6 222 67.6
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 9.1e-72 274.2 224 65.2
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 7.7e-71 271.2 222 67.1
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.0e-70 270.8 219 61.6
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.0e-70 270.8 219 62.1
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 3.8e-70 268.9 218 63.8
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 5.0e-70 268.5 219 61.6
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 5.0e-70 268.5 217 64.1
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 8.6e-70 267.7 220 64.5
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.9e-69 266.5 220 65.0
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 5.5e-69 265.0 218 63.8
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.5e-69 265.0 219 62.6
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.5e-69 265.0 227 63.4
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 7.2e-69 264.6 246 58.9
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 9.5e-69 264.2 218 61.9
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 2.1e-68 263.1 218 64.2
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.8e-68 262.7 218 61.9
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.0e-66 256.5 218 60.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 2.0e-66 256.5 223 62.3
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 3.4e-66 255.8 218 60.1
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 4.4e-66 255.4 223 60.1
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 4.4e-66 255.4 223 60.1
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 5.7e-66 255.0 218 59.6
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 5.7e-66 255.0 218 60.6
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 7.5e-66 254.6 223 60.1
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 7.5e-66 254.6 218 60.1
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 7.5e-66 254.6 218 60.6
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 9.8e-66 254.2 216 62.5
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 1.3e-65 253.8 218 63.3
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 2.2e-65 253.1 223 59.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 2.8e-65 252.7 214 61.2
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 8.3e-65 251.1 223 59.2
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.4e-64 250.4 264 53.8
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.1e-64 249.2 165 75.2
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 5.4e-64 248.4 234 59.4
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 7.0e-64 248.1 231 58.0
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 7.0e-64 248.1 183 70.5
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.6e-63 246.9 217 61.8
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 4.5e-63 245.4 232 56.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.3e-62 243.8 230 58.3
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.9e-62 242.7 203 64.5
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 3.8e-62 242.3 224 61.2
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 3.8e-62 242.3 229 59.4
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 8.6e-62 241.1 207 63.3
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 8.6e-62 241.1 225 59.6
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.5e-61 240.4 206 62.1
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.5e-61 239.6 217 60.4
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 5.6e-61 238.4 230 54.3
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 7.3e-61 238.0 185 65.4
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.2e-60 237.3 255 55.7
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.4e-59 233.8 217 59.0
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 4.0e-59 232.3 215 60.0
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 6.8e-59 231.5 252 53.6
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 8.9e-59 231.1 275 52.4
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.2e-58 230.7 215 60.0
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.5e-58 230.3 343 41.7
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.4e-58 229.2 183 67.8
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 9.8e-58 227.6 222 56.8
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.4e-56 221.9 154 72.1
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 5.0e-54 215.3 194 59.8
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.6e-53 211.8 144 72.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 5.6e-53 211.8 214 58.4
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 7.3e-53 211.5 196 57.7
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 4.9e-49 198.7 194 56.7
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.1e-48 197.6 252 46.8
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.2e-48 196.1 138 76.1
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 9.2e-48 194.5 168 60.1
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.1e-47 193.4 190 57.4
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 7.8e-47 191.4 147 67.3
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 3.0e-38 162.9 203 50.7
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 8.6e-38 161.4 139 64.7
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 8.6e-38 161.4 134 64.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 4.0e-35 152.5 118 68.6
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 6.8e-35 151.8 153 59.5
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 6.8e-35 151.8 144 59.7
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 2.6e-34 149.8 166 54.8
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 3.5e-31 139.4 97 74.2
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.7e-28 129.0 94 68.1
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 4.7e-28 129.0 180 41.7
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 3.1e-27 126.3 125 55.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 3.2e-24 116.3 195 39.5
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.7e-22 110.5 148 43.9
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 8.7e-22 108.2 181 36.5
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 2.5e-21 106.7 204 35.3
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 4.8e-20 102.4 91 58.2
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 2.0e-18 97.1 150 42.7
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 5.8e-18 95.5 94 53.2
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.3e-17 94.4 59 67.8
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.1e-16 91.3 98 49.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.1e-13 81.3 59 66.1
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 7.4e-13 78.6 50 72.0
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 7.6e-10 68.6 139 36.7
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 5.5e-08 62.4 183 31.7
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 2.3e-06 57.0 71 50.7


User provided reference genes

Program Settings