Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.0e-37 156.4 77 100.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.6e-36 154.8 76 98.7
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-21 106.3 57 93.0
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 9.0e-21 103.2 57 86.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 9.0e-21 103.2 57 86.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 9.0e-21 103.2 57 86.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 2.0e-20 102.1 57 84.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 2.6e-20 101.7 57 86.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.5e-15 85.9 61 73.8
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 4.3e-15 84.3 59 72.9
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 4.3e-15 84.3 61 70.5
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 4.3e-15 84.3 61 72.1
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.7e-15 84.0 61 72.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 2.2e-14 82.0 61 70.5
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 2.2e-14 82.0 60 71.7
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.8e-14 81.6 60 70.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 2.8e-14 81.6 62 69.4
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 4.8e-14 80.9 61 67.2
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 4.8e-14 80.9 61 70.5
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 4.8e-14 80.9 61 70.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 8.2e-14 80.1 62 67.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 8.2e-14 80.1 61 68.9
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 1.1e-13 79.7 62 67.7
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 1.4e-13 79.3 61 67.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.4e-13 79.3 61 68.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 1.8e-13 79.0 44 86.4
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.8e-13 79.0 61 65.6
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 3.1e-13 78.2 57 70.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 3.1e-13 78.2 61 67.2
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.1e-13 77.8 46 82.6
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 6.9e-13 77.0 61 62.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 6.9e-13 77.0 61 67.2
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 9.1e-13 76.6 61 67.2
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.2e-12 76.3 59 69.5
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 2.0e-12 75.5 57 68.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 2.0e-12 75.5 57 66.7
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 2.6e-12 75.1 61 65.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 3.4e-12 74.7 57 64.9
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 5.9e-12 73.9 44 81.8
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 7.7e-12 73.6 57 66.7
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 7.7e-12 73.6 57 66.7
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 7.7e-12 73.6 57 66.7
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 7.7e-12 73.6 39 89.7
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.3e-11 72.8 44 77.3
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.3e-11 72.8 61 62.3
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.3e-11 72.8 43 81.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 1.3e-11 72.8 43 76.7
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 1.3e-11 72.8 57 63.2
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.7e-11 72.4 61 62.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.7e-11 72.4 44 79.5
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 2.9e-11 71.6 58 63.8
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.9e-11 71.6 61 60.7
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.8e-11 71.2 61 60.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 3.8e-11 71.2 52 63.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 5.0e-11 70.9 57 63.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 6.5e-11 70.5 45 82.2
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 8.5e-11 70.1 45 75.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 1.4e-10 69.3 42 81.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-10 68.9 57 56.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.5e-10 68.6 57 63.2
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.5e-10 68.6 61 63.9
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 2.5e-10 68.6 42 78.6
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.2e-10 68.2 61 59.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.2e-10 68.2 57 56.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 5.5e-10 67.4 52 59.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.2e-10 67.0 43 76.7
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.2e-10 67.0 44 72.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.4e-10 66.6 39 82.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.2e-09 66.2 63 54.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 1.2e-09 66.2 58 58.6
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.6e-09 65.9 61 57.4
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 2.1e-09 65.5 51 66.7
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 2.1e-09 65.5 57 56.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 2.1e-09 65.5 61 55.7
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.1e-09 65.5 44 68.2
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 4.6e-09 64.3 44 68.2
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 6.1e-09 63.9 61 55.7
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.1e-09 63.9 57 56.1
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 7.9e-09 63.5 39 76.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.0e-08 63.2 38 73.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.0e-08 63.2 38 73.7
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.0e-08 63.2 46 65.2
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.3e-08 62.0 39 74.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 2.3e-08 62.0 57 56.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.0e-08 61.6 51 58.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 3.9e-08 61.2 38 73.7
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.9e-08 61.2 38 73.7
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 3.9e-08 61.2 38 73.7
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 5.1e-08 60.8 55 54.5
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 5.1e-08 60.8 55 54.5
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 5.1e-08 60.8 55 54.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 5.1e-08 60.8 55 54.5
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 6.7e-08 60.5 37 75.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 6.7e-08 60.5 57 54.4
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 8.8e-08 60.1 38 71.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 8.8e-08 60.1 38 71.1
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 8.8e-08 60.1 38 71.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 2.6e-07 58.5 41 65.9
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 3.3e-07 58.2 39 69.2
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.2e-06 55.5 42 66.7
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 6.3e-06 53.9 41 58.5


User provided reference genes

Program Settings