Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 0.0e+00 1646.7 924 100.0
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 0.0e+00 1324.7 934 81.7
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 0.0e+00 1324.7 934 81.7
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 0.0e+00 1323.5 934 81.6
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 0.0e+00 1313.9 860 84.3
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 0.0e+00 1206.0 862 78.2
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 3.8e-299 1031.6 951 65.1
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.9e-298 1029.2 913 65.3
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 9.7e-295 1016.9 949 63.0
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.5e-292 1009.6 906 64.7
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 3.8e-291 1005.0 905 64.0
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.1e-290 1003.4 896 64.8
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.8e-288 996.1 961 65.3
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 8.8e-288 993.8 848 67.9
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.5e-287 993.0 871 66.4
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 3.3e-287 991.9 869 64.8
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 7.4e-287 990.7 939 64.3
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 6.5e-283 977.6 902 64.0
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.5e-282 975.7 864 65.4
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 2.7e-281 972.2 904 62.8
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 1.0e-280 970.3 840 66.2
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 3.0e-280 968.8 903 63.5
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.3e-279 965.3 904 64.0
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.1e-277 960.3 903 63.8
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 4.2e-274 948.3 901 62.0
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 7.2e-274 947.6 905 62.8
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 1.0e-272 943.7 875 63.1
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.0e-272 943.7 865 62.8
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.4e-272 943.3 954 61.8
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 6.7e-272 941.0 868 63.1
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.0e-271 939.5 902 61.3
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.2e-270 936.0 865 63.7
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.4e-269 933.3 908 60.8
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 4.2e-266 921.8 957 62.2
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.5e-266 921.4 865 61.4
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 6.1e-265 917.9 878 60.7
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.8e-264 916.4 876 61.0
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 4.0e-264 915.2 933 58.7
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 5.7e-263 911.4 909 59.5
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 7.5e-263 911.0 901 59.6
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 1.3e-262 910.2 953 59.5
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 1.7e-262 909.8 843 60.4
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 1.1e-261 907.1 888 60.5
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.0e-259 900.6 962 57.5
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.5e-258 896.7 940 57.1
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 4.7e-257 891.7 950 58.2
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 8.9e-256 887.5 901 59.0
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 5.4e-253 878.2 860 58.7
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.6e-252 876.7 947 59.7
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 7.8e-252 874.4 946 61.1
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.3e-251 873.6 868 58.1
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.1e-250 870.5 898 57.5
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.3e-250 868.6 946 55.0
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 4.7e-249 865.1 959 58.2
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.0e-248 864.0 882 61.5
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 1.0e-248 864.0 892 58.7
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 2.6e-247 859.4 943 56.8
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 9.8e-247 857.4 889 58.8
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.7e-246 856.7 888 57.8
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.4e-245 853.6 939 57.1
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.4e-245 853.6 884 57.8
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.7e-244 849.4 969 53.7
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 3.5e-244 849.0 892 59.0
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 6.0e-244 848.2 957 54.9
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 7.8e-244 847.8 894 57.7
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.0e-243 847.4 943 56.6
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 2.3e-243 846.3 867 58.1
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 3.6e-241 839.0 888 57.4
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 2.0e-239 833.2 863 58.2
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.5e-239 831.2 802 60.2
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.2e-238 829.7 1010 55.8
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 1.4e-237 827.0 858 56.6
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.4e-237 826.2 896 54.7
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 3.0e-235 819.3 882 57.6
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 6.6e-235 818.1 868 56.0
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.9e-234 816.6 937 53.8
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 1.6e-233 813.5 944 52.4
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.6e-233 813.5 946 53.4
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.8e-232 810.1 849 56.8
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 2.0e-231 806.6 904 56.2
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.4e-231 805.8 981 53.0
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 1.3e-230 803.9 925 52.9
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 1.7e-230 803.5 936 51.7
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 1.7e-230 803.5 936 51.7
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 8.3e-230 801.2 940 51.8
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 8.3e-230 801.2 922 52.9
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.6e-228 797.0 814 58.5
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 2.1e-228 796.6 790 59.7
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.0e-227 792.7 940 51.5
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.9e-226 790.0 925 52.6
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.4e-224 783.9 853 54.6
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 2.3e-219 766.5 851 53.9
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 3.0e-219 766.1 937 51.1
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 3.3e-218 762.7 939 52.1
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 2.4e-216 756.5 940 50.4
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.7e-214 750.4 947 49.9
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 2.9e-214 749.6 854 52.6
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 4.2e-213 745.7 928 50.8
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 3.3e-210 736.1 945 49.1
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 7.3e-210 734.9 928 50.2
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 5.8e-207 725.3 866 52.0
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.7e-204 716.5 838 51.1
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.5e-197 693.3 609 61.6
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.8e-195 687.2 718 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 7.6e-191 671.8 898 47.1
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 9.3e-189 664.8 989 45.9
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 1.5e-186 657.5 993 43.0
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.4e-184 651.0 483 69.8
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.2e-183 647.9 927 46.1
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 5.1e-171 605.9 906 43.9
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.3e-169 599.0 480 66.2
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 2.1e-164 583.9 875 43.0
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 6.1e-164 582.4 477 63.9
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 6.1e-148 529.3 848 42.6
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 4.0e-131 473.4 572 51.2
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.5e-122 444.9 553 46.7
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 7.3e-101 372.9 482 48.1
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.4e-91 342.0 324 55.9
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 7.6e-90 336.3 362 61.3
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 3.0e-86 324.3 466 60.9
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 4.3e-85 320.5 293 59.4
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 6.2e-84 316.6 439 44.9
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 3.4e-82 310.8 428 45.6
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 6.7e-78 296.6 475 46.9
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.1e-76 291.6 260 59.2
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 5.1e-70 270.4 408 50.0
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 8.2e-68 263.1 435 40.0
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 4.5e-66 257.3 500 33.8
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.8e-62 245.4 171 69.6
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 3.0e-62 244.6 339 51.3
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 2.8e-60 238.0 609 29.2
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 8.5e-57 226.5 388 49.2
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 2.0e-53 215.3 167 64.1
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.2e-40 171.0 151 66.9
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.2e-39 169.5 151 66.9
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 8.5e-33 146.7 88 88.6
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-31 142.9 88 86.4
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 4.7e-31 141.0 92 69.6
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 4.1e-27 127.9 77 83.1
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.3e-24 117.1 87 77.0
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.6e-23 114.8 206 40.3
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.9e-20 105.1 86 59.3
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 2.9e-20 105.1 76 73.7
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.4e-19 102.8 88 60.2
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 6.6e-17 94.0 140 48.6
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.3e-14 85.5 85 54.1
COL.COLO4_32828 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.2e-12 79.0 55 83.6
COL.COLO4_19666 Corchorus olitorius HOM05D004199 ORTHO05D025158 4.9e-12 77.8 55 83.6
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.0e-09 70.1 128 35.2
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 1.8e-06 59.3 61 52.5
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 1.8e-06 59.3 61 52.5
TPR.G37907 Trifolium pratense HOM05D004199 ORTHO05D411047 1.8e-06 59.3 57 50.9
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 5.2e-06 57.8 40 55.0


User provided reference genes

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