Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_29026 Corchorus olitorius HOM05D000228 ORTHO05D016956 1.0e-76 290.0 152 100.0
COL.COLO4_19723 Corchorus olitorius HOM05D001439 ORTHO05D007599 3.7e-66 255.0 162 87.0
COL.COLO4_37588 Corchorus olitorius HOM05D000228 ORTHO05D016956 5.3e-65 251.1 161 85.7
COL.COLO4_18403 Corchorus olitorius HOM05D000228 ORTHO05D001545 2.8e-58 228.8 152 84.9
Duzib150G0751 Durio zibethinus HOM05D000228 ORTHO05D001545 3.9e-52 208.4 154 76.0
COL.COLO4_14804 Corchorus olitorius HOM05D000228 ORTHO05D001545 4.5e-48 194.9 156 71.2
Gorai.003G139100 Gossypium raimondii HOM05D000228 ORTHO05D001545 7.7e-48 194.1 154 71.4
Gohir.A03G036100 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.3e-47 193.4 154 71.4
Gohir.D03G132200 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.3e-47 193.4 154 71.4
Thecc.03G012000 Theobroma cacao HOM05D000228 ORTHO05D001545 5.2e-44 181.4 155 67.7
Cfa011405 Carpinus fangiana HOM05D000228 ORTHO05D001545 3.1e-41 172.2 150 63.3
Haze_23976 Corylus avellana HOM05D000228 ORTHO05D001545 7.0e-41 171.0 150 63.3
Ciclev10027681m.g Citrus clementina HOM05D000228 ORTHO05D001545 5.5e-38 161.4 155 59.4
CiPaw.14G074800 Carya illinoinensis HOM05D000228 ORTHO05D001545 3.6e-37 158.7 150 58.7
Manes.17G000400 Manihot esculenta HOM05D000228 ORTHO05D001545 5.2e-36 154.8 153 56.2
Eucgr.J02108 Eucalyptus grandis HOM05D000228 ORTHO05D001545 6.7e-36 154.5 157 58.0
PGR119G1503 Punica granatum HOM05D000228 ORTHO05D001545 8.8e-36 154.1 154 60.4
Actinidia03765 Actinidia chinensis HOM05D000228 ORTHO05D001545 2.0e-35 152.9 144 61.1
Lalb_Chr01g0003921 Lupinus albus HOM05D000228 ORTHO05D001545 9.7e-35 150.6 147 60.5
Phvul.011G070100 Phaseolus vulgaris HOM05D000228 ORTHO05D001545 3.7e-34 148.7 150 58.7
CSS0035598 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 6.3e-34 147.9 151 57.0
Potri.001G341900 Populus trichocarpa HOM05D000228 ORTHO05D001545 6.3e-34 147.9 153 55.6
TWI75G1460 Tripterygium wilfordii HOM05D000228 ORTHO05D001545 6.3e-34 147.9 153 58.8
vmacro12980 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 8.2e-34 147.5 147 59.2
Sed0007851 Sechium edule HOM05D000228 ORTHO05D001545 1.8e-33 146.4 150 55.3
Sabra16G0221600 Salix brachista HOM05D000228 ORTHO05D001545 2.4e-33 146.0 153 54.9
arahy.Tifrunner.gnm1.ann1.NH5KQA Arachis hypogaea HOM05D000228 ORTHO05D001545 3.1e-33 145.6 147 55.1
CSS0025979 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 3.1e-33 145.6 151 56.3
arahy.Tifrunner.gnm1.ann1.E1FMMY Arachis hypogaea HOM05D000228 ORTHO05D001545 4.1e-33 145.2 147 55.8
Glyma.11G147317 Glycine max HOM05D000228 ORTHO05D001545 4.1e-33 145.2 143 60.1
Atru.chr3.3760 Acer truncatum HOM05D000228 ORTHO05D001545 2.7e-32 142.5 156 54.5
ClCG03G002130 Citrullus lanatus HOM05D000228 ORTHO05D001545 2.7e-32 142.5 150 54.0
MELO3C026854.2 Cucumis melo HOM05D000228 ORTHO05D001545 5.9e-32 141.4 150 54.0
CsaV3_1G012790 Cucumis sativus L. HOM05D000228 ORTHO05D001545 5.9e-32 141.4 150 54.0
GSVIVG01025079001 Vitis vinifera HOM05D000228 ORTHO05D001545 1.7e-31 139.8 145 55.2
Rhsim01G0223300 Rhododendron simsii HOM05D000228 ORTHO05D001545 2.2e-31 139.4 179 48.0
Ca_19216_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 1.5e-30 136.7 150 58.0
HanXRQChr04g0106851 Helianthus annuus HOM05D000228 ORTHO05D001545 1.9e-30 136.3 139 54.7
DCAR_018871 Daucus carota HOM05D000228 ORTHO05D001545 5.5e-30 134.8 150 53.3
Nitab4.5_0004839g0020 Nicotiana tabacum HOM05D000228 ORTHO05D001545 5.5e-30 134.8 150 54.7
CANSAT56G4454 Cannabis sativa HOM05D000228 ORTHO05D001545 7.2e-30 134.4 150 53.3
Lj3C239T4 Lonicera japonica HOM05D000228 ORTHO05D001545 9.4e-30 134.0 147 55.8
MD03G1106800 Malus domestica HOM05D000228 ORTHO05D001545 2.7e-29 132.5 158 51.9
Nitab4.5_0004015g0070 Nicotiana tabacum HOM05D000228 ORTHO05D001545 3.6e-29 132.1 150 54.0
Nitab4.5_0001885g0030 Nicotiana tabacum HOM05D000228 ORTHO05D001545 4.7e-29 131.7 149 53.7
SGA_v2.0_scaffold110G31200 Striga asiatica HOM05D000228 ORTHO05D001545 1.8e-28 129.8 146 54.8
HanXRQChr08g0230641 Helianthus annuus HOM05D000228 ORTHO05D001545 3.0e-28 129.0 140 52.9
MSTRG.17722 Avicennia marina HOM05D000228 ORTHO05D001545 4.0e-28 128.6 145 53.8
Dinv27602 Davidia involucrata HOM05D000228 ORTHO05D001545 4.0e-28 128.6 125 59.2
MD09G1157000 Malus domestica HOM05D000228 ORTHO05D001545 4.0e-28 128.6 150 53.3
QL06p007429 Quercus lobata HOM05D000228 ORTHO05D001545 4.0e-28 128.6 210 41.4
TAR623G0006 Trochodendron aralioides HOM05D000228 ORTHO05D001545 4.0e-28 128.6 146 52.7
Lj1g0011731 Lotus japonicus HOM05D000228 ORTHO05D001545 8.8e-28 127.5 146 54.8
Solyc11g072730.2 Solanum lycopersicum HOM05D000228 ORTHO05D001545 8.8e-28 127.5 153 52.3
Sopen11g030400 Solanum pennellii HOM05D000228 ORTHO05D001545 8.8e-28 127.5 153 52.3
CAN.G1190.18 Capsicum annuum HOM05D000228 ORTHO05D001545 1.5e-27 126.7 153 52.9
ECA247G0560 Erigeron canadensis HOM05D000228 ORTHO05D001545 1.5e-27 126.7 139 54.0
Psat7g221400 Pisum sativum HOM05D000228 ORTHO05D001545 3.4e-27 125.6 147 53.1
Peaxi162Scf00616g00511 Petunia axillaris HOM05D000228 ORTHO05D001545 4.4e-27 125.2 153 51.0
ECA233G1127 Erigeron canadensis HOM05D000228 ORTHO05D001545 7.5e-27 124.4 142 52.8
Nitab4.5_0001885g0040 Nicotiana tabacum HOM05D000228 ORTHO05D001545 7.5e-27 124.4 162 50.0
Migut.A00876 Erythranthe guttata HOM05D000228 ORTHO05D001545 2.2e-26 122.9 146 50.7
CDE02G3052 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 3.7e-26 122.1 146 52.1
Lsat_1_v5_gn_9_21100 Lactuca sativa HOM05D000228 ORTHO05D001545 3.7e-26 122.1 139 50.4
Migut.C00025 Erythranthe guttata HOM05D000228 ORTHO05D001545 4.8e-26 121.7 146 50.7
Medtr4g061800 Medicago truncatula HOM05D000228 ORTHO05D001545 1.8e-25 119.8 146 50.0
PSO384G5084 Papaver somniferum HOM05D000228 ORTHO05D001545 9.1e-25 117.5 150 47.3
PSO699G0040 Papaver somniferum HOM05D000228 ORTHO05D001545 9.1e-25 117.5 150 47.3
Medtr4g061700 Medicago truncatula HOM05D000228 ORTHO05D001545 1.2e-24 117.1 149 49.7
THA.LOC104810826 Tarenaya hassleriana HOM05D000228 ORTHO05D001545 5.9e-24 114.8 150 50.0
VMungo1127G1617 Vigna mungo HOM05D000228 ORTHO05D001545 1.0e-23 114.0 119 58.0
TPR.G2993 Trifolium pratense HOM05D000228 ORTHO05D001545 2.9e-23 112.5 153 49.0
EL10Ac3g06609 Beta vulgaris HOM05D000228 ORTHO05D001545 5.0e-23 111.7 147 49.0
FAN11G3166 Fragaria x ananassa HOM05D000228 ORTHO05D001545 8.5e-23 110.9 159 45.9
Thhalv10012446m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 1.1e-22 110.5 150 50.0
FvH4_3g34290 Fragaria vesca HOM05D000228 ORTHO05D001545 1.1e-22 110.5 159 45.9
FAN16G3688 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.1e-22 110.5 159 45.9
FAN21G2820 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.1e-22 110.5 159 45.9
RcHm_v2.0_Chr5g0061861 Rosa chinensis HOM05D000228 ORTHO05D001545 1.5e-22 110.2 159 46.5
Sp6g21700 Schrenkiella parvula HOM05D000228 ORTHO05D001545 2.5e-22 109.4 150 50.7
AT5G60040 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 3.2e-22 109.0 150 50.7
Carub.0008s2074 Capsella rubella HOM05D000228 ORTHO05D001545 3.2e-22 109.0 150 50.0
CARHR273660 Cardamine hirsuta HOM05D000228 ORTHO05D001545 3.2e-22 109.0 150 50.7
AL8G36630 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 5.5e-22 108.2 150 50.0
Aa31LG1G12200 Aethionema arabicum HOM05D000228 ORTHO05D001545 7.2e-22 107.8 151 46.4
Ah.04g153590 Amaranthus hybridus HOM05D000228 ORTHO05D001545 9.5e-22 107.5 147 46.9
Nn2g12369 Nelumbo nucifera HOM05D000228 ORTHO05D001545 1.6e-21 106.7 145 49.7
CAN.G84.13 Capsicum annuum HOM05D000228 ORTHO05D001545 3.6e-21 105.5 151 47.0
PSO017G3640 Papaver somniferum HOM05D000228 ORTHO05D001545 3.6e-21 105.5 158 42.4
Pp3c17_4860 Physcomitrium patens HOM05D000228 ORTHO05D001545 4.7e-21 105.1 138 48.6
Lsat_1_v5_gn_2_6980 Lactuca sativa HOM05D000228 ORTHO05D001545 6.1e-21 104.8 145 46.9
Aqoxy4G03124 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 8.0e-21 104.4 178 41.0
Cpa.g.sc7.208 Carica papaya HOM05D000228 ORTHO05D001545 1.4e-20 103.6 145 46.2
BcaB05g22610 Brassica carinata HOM05D000228 ORTHO05D001545 1.8e-20 103.2 149 47.7
AUR62006512 Chenopodium quinoa HOM05D000228 ORTHO05D001545 1.8e-20 103.2 145 48.3
RcHm_v2.0_Chr3g0469301 Rosa chinensis HOM05D000228 ORTHO05D001545 1.8e-20 103.2 158 44.3
AUR62025018 Chenopodium quinoa HOM05D000228 ORTHO05D001545 2.3e-20 102.8 145 47.6
Mapoly0051s0017 Marchantia polymorpha HOM05D000228 ORTHO05D001545 3.0e-20 102.4 141 46.1
EL10Ac1g02243 Beta vulgaris HOM05D000228 ORTHO05D001545 6.8e-20 101.3 146 45.2
Os04g0492300 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 6.8e-20 101.3 145 44.8
Atru.chr3.3762 Acer truncatum HOM05D000228 ORTHO05D001545 8.8e-20 100.9 151 45.0
A02p06630 Brassica napus HOM05D000228 ORTHO05D001545 1.2e-19 100.5 150 47.3
BraA02t05745Z Brassica rapa HOM05D000228 ORTHO05D001545 1.2e-19 100.5 150 47.3
BolC2t07289H Brassica oleracea HOM05D000228 ORTHO05D001545 2.6e-19 99.4 150 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2196 Anthoceros agrestis HOM05D000228 ORTHO05D001545 7.5e-19 97.8 146 43.8
Zm00001eb078830 Zea mays HOM05D000228 ORTHO05D001545 9.8e-19 97.4 146 42.5
COL.COLO4_24414 Corchorus olitorius HOM05D000228 ORTHO05D016956 1.3e-18 97.1 50 94.0
Peaxi162Scf00616g00621 Petunia axillaris HOM05D000228 ORTHO05D001545 2.2e-18 96.3 155 44.5
Eucgr.E03559 Eucalyptus grandis HOM05D000228 ORTHO05D016956 4.9e-18 95.1 93 60.2
Sc19g0005360 Simmondsia chinensis HOM05D000228 ORTHO05D001545 4.9e-18 95.1 150 43.3
AUR62035701 Chenopodium quinoa HOM05D000228 ORTHO05D001545 1.1e-17 94.0 143 44.8
SMO143G0104 Selaginella moellendorffii HOM05D000228 ORTHO05D001545 1.8e-17 93.2 141 44.7
Aqoxy4G03122 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 4.1e-17 92.0 145 44.1
COL.COLO4_35510 Corchorus olitorius HOM05D000228 ORTHO05D016956 2.0e-16 89.7 62 79.0
FAN02G1283 Fragaria x ananassa HOM05D000228 ORTHO05D016956 5.0e-15 85.1 148 40.5
ATR0594G163 Amborella trichopoda HOM05D000228 ORTHO05D001545 5.6e-14 81.6 147 40.8
Prupe.6G089600 Prunus persica HOM05D000228 ORTHO05D001545 7.3e-14 81.3 159 36.5
Aa31LG1G12170 Aethionema arabicum HOM05D000228 ORTHO05D001545 4.7e-13 78.6 147 40.1
Cre03.g165750 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D001545 4.7e-13 78.6 141 40.4
MCO05G255 Micromonas commoda HOM05D000228 ORTHO05D001545 3.4e-11 72.4 152 36.8
SEGI_00401 Sequoiadendron giganteum HOM05D000228 ORTHO05D016956 7.5e-11 71.2 99 45.5
SEGI_26218 Sequoiadendron giganteum HOM05D000228 ORTHO05D016956 7.5e-11 71.2 99 45.5
FvH4_6g15630 Fragaria vesca HOM05D000228 ORTHO05D001545 3.7e-10 68.9 143 34.3
FAN14G3914 Fragaria x ananassa HOM05D000228 ORTHO05D001545 5.4e-09 65.1 137 35.0
PRCOL_00001662 Prasinoderma coloniale HOM05D000228 ORTHO05D001545 6.6e-07 58.2 162 34.6
Thecc.09G334100 Theobroma cacao HOM05D000228 ORTHO05D001545 8.6e-07 57.8 33 81.8
SHI06011 Sapria himalayana HOM05D000228 ORTHO05D016956 1.9e-06 56.6 73 45.2
SHI06010 Sapria himalayana HOM05D000228 ORTHO05D016956 4.3e-06 55.5 56 53.6
TPR.G8519 Trifolium pratense HOM05D000228 ORTHO05D001545 9.5e-06 54.3 37 67.6


User provided reference genes

Program Settings