Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 7.6e-272 939.9 469 100.0
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 7.3e-182 641.0 357 89.4
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 4.4e-179 631.7 358 86.9
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.7e-175 619.8 358 86.6
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 5.1e-175 618.2 358 86.3
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 8.7e-175 617.5 358 86.0
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 1.4e-156 557.0 357 74.5
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 3.2e-153 545.8 359 74.7
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 9.3e-153 544.3 358 74.9
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 3.5e-152 542.3 357 73.9
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 3.5e-152 542.3 356 73.0
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 6.0e-152 541.6 356 71.3
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.0e-151 540.8 357 73.9
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 1.3e-151 540.4 360 73.6
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.0e-151 539.3 357 73.1
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 3.9e-151 538.9 357 73.4
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 3.9e-151 538.9 357 73.4
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 3.9e-151 538.9 358 74.3
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 5.1e-151 538.5 359 72.1
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 6.7e-151 538.1 357 73.1
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 6.7e-151 538.1 357 73.1
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 6.7e-151 538.1 357 73.1
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 6.7e-151 538.1 359 73.0
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.1e-150 537.3 357 73.1
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.3e-150 535.8 357 73.1
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 7.4e-150 534.6 366 72.4
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 1.3e-149 533.9 358 73.2
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.3e-149 533.9 357 73.4
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 1.3e-149 533.9 359 73.0
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 2.8e-149 532.7 358 72.1
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 3.7e-149 532.3 357 72.5
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 4.8e-149 531.9 359 73.8
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 6.9e-148 528.1 358 72.6
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.5e-147 526.9 358 72.3
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.5e-147 526.9 359 72.1
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.3e-146 523.9 359 72.4
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 2.2e-146 523.1 347 73.8
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 2.9e-146 522.7 359 71.6
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 3.8e-146 522.3 357 71.7
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 3.8e-146 522.3 354 72.0
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 3.8e-146 522.3 358 72.1
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.1e-145 520.8 359 70.5
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 5.5e-145 518.5 358 71.5
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 7.2e-145 518.1 358 71.2
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 9.4e-145 517.7 359 69.9
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 1.6e-144 516.9 357 71.1
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.6e-144 516.9 358 71.5
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.6e-144 516.9 356 71.1
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.6e-144 516.9 358 71.2
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.1e-144 516.5 357 70.0
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 4.6e-144 515.4 357 70.3
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 4.6e-144 515.4 359 70.5
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 3.9e-143 512.3 358 69.6
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 2.2e-141 506.5 359 69.1
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 6.3e-141 505.0 358 69.0
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 8.2e-141 504.6 372 69.1
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 8.2e-141 504.6 357 69.2
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 6.9e-140 501.5 358 68.2
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.3e-138 497.3 358 68.4
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 8.5e-138 494.6 363 68.9
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.4e-137 493.8 357 68.3
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 3.2e-137 492.7 359 68.0
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 9.4e-137 491.1 357 68.3
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.6e-136 490.3 359 67.1
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 6.1e-136 488.4 361 67.3
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 6.1e-136 488.4 359 67.4
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 7.9e-136 488.0 359 67.4
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.0e-135 487.6 359 66.3
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 1.8e-135 486.9 359 66.9
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.3e-133 480.7 360 65.8
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.3e-133 480.7 360 65.8
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 3.7e-133 479.2 357 65.8
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 3.7e-133 479.2 358 67.0
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.3e-133 478.4 352 67.0
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 8.2e-133 478.0 370 62.4
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 8.2e-133 478.0 370 62.4
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 1.1e-132 477.6 357 64.1
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.1e-132 477.6 357 64.1
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.1e-132 477.6 370 62.2
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.4e-132 477.2 358 66.5
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.8e-132 476.9 357 65.0
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 2.4e-132 476.5 357 63.9
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 7.0e-132 474.9 351 67.2
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 9.1e-132 474.6 357 63.3
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 2.6e-131 473.0 372 65.6
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 1.3e-130 470.7 357 63.6
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.2e-130 469.9 357 64.1
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 2.9e-130 469.5 356 64.9
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 3.8e-130 469.2 357 63.6
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 6.5e-130 468.4 356 65.2
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 8.5e-130 468.0 357 65.3
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.4e-129 467.2 354 65.3
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 1.9e-129 466.8 355 65.4
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 1.9e-129 466.8 356 66.0
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 2.5e-129 466.5 357 63.3
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 4.2e-129 465.7 357 63.9
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 4.2e-129 465.7 355 65.4
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.2e-128 464.2 381 63.5
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 1.6e-128 463.8 357 63.0
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 2.0e-126 456.8 437 54.9
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 7.4e-126 454.9 361 62.3
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-125 454.1 383 59.3
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 8.2e-125 451.4 354 63.3
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.8e-124 450.3 357 61.6
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 5.3e-124 448.7 389 58.9
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 4.5e-123 445.7 360 63.3
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 8.5e-122 441.4 351 61.3
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.5e-121 440.7 357 63.0
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.1e-120 435.3 349 61.3
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 3.0e-119 433.0 362 61.6
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.3e-117 427.6 387 57.4
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 3.7e-117 426.0 357 61.1
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 2.2e-114 416.8 354 60.7
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 2.2e-114 416.8 309 67.0
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 2.5e-113 413.3 357 57.1
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 8.8e-111 404.8 383 54.6
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 5.9e-107 392.1 288 68.4
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 9.5e-105 384.8 357 56.3
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 4.4e-102 375.9 357 55.5
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 2.8e-101 373.2 350 53.4
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.4e-100 370.9 354 55.9
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 4.5e-99 365.9 278 64.0
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 2.9e-93 346.7 364 50.8
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 2.6e-86 323.6 262 62.2
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.2e-83 314.7 352 50.0
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 1.4e-76 291.2 223 65.9
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 9.2e-76 288.5 249 58.6
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 2.1e-75 287.3 224 62.9
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 6.6e-74 282.3 452 37.8
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 2.5e-73 280.4 357 43.4
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.6e-67 261.2 361 41.3
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 7.3e-65 252.3 181 69.6
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 6.9e-63 245.7 222 57.2
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 7.1e-60 235.7 249 52.2
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 6.9e-55 219.2 205 57.6
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 2.0e-54 217.6 352 39.2
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-53 214.5 213 54.0
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 3.8e-53 213.4 178 61.8
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 4.9e-53 213.0 161 64.0
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.9e-50 203.4 168 58.3
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.1e-48 197.6 142 71.1
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 1.7e-45 188.0 127 73.2
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 6.0e-43 179.5 351 36.8
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.8e-39 167.9 142 60.6
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 4.1e-39 166.8 119 68.1
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.9e-37 160.6 127 63.8
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.1e-35 154.5 142 57.7
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.2e-32 144.4 308 35.7
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.4e-31 141.0 119 61.3
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.1e-31 140.2 119 62.2
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.0e-29 133.3 119 59.7
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.5e-29 132.9 188 44.7
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 1.4e-28 131.7 105 59.0
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.6e-27 127.1 80 77.5
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.3e-26 124.4 132 50.8
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 5.1e-26 123.2 248 35.9
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.7e-24 118.2 284 33.8
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.5e-22 111.7 66 80.3
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.2e-21 107.8 336 28.0
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.9e-21 107.5 70 70.0
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.5e-21 105.9 66 75.8
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.2e-20 102.8 177 40.1
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.4e-20 102.4 93 58.1
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-19 101.7 70 68.6
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 7.9e-19 99.4 71 64.8
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 1.0e-18 99.0 71 66.2
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-18 99.0 247 33.2
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 1.4e-18 98.6 69 68.1
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.7e-18 96.3 91 47.3
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 2.6e-17 94.4 95 53.7
Mapoly0071s0005 Marchantia polymorpha HOM05D003501 ORTHO05D018303 1.3e-16 92.0 377 25.2
QL93p1877_0036 Quercus lobata HOM05D003501 ORTHO05D004388 1.3e-16 92.0 76 60.5
Cre01.g053288 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D018303 5.3e-15 86.7 337 25.2
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 9.1e-15 85.9 58 70.7
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 1.2e-14 85.5 70 58.6
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.9e-14 83.2 94 48.9
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.7e-13 81.6 70 54.3
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.9e-12 78.2 88 48.9
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.2e-12 77.0 94 47.9
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.6e-11 73.9 53 67.9
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 1.4e-10 72.0 66 47.0
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 2.0e-09 68.2 124 36.3
AL1G16300 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 2.6e-09 67.8 99 37.4
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.3e-08 63.2 85 41.2
PRCOL_00003579 Prasinoderma coloniale HOM05D003501 ORTHO05D018303 8.2e-08 62.8 176 29.0
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.4e-07 61.2 83 41.0


User provided reference genes

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