Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.8e-157 559.3 302 100.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.9e-147 525.4 302 92.7
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-145 520.0 302 90.7
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.2e-145 520.0 302 90.7
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.3e-144 515.8 302 91.4
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.5e-143 512.3 302 89.4
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.3e-136 489.2 303 88.4
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.4e-133 479.9 305 84.9
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 5.3e-133 478.0 307 83.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 6.9e-133 477.6 314 80.6
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 5.8e-132 474.6 304 80.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 7.6e-132 474.2 312 79.8
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.7e-131 473.0 307 83.4
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 5.0e-131 471.5 304 81.6
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.5e-131 471.1 304 79.6
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 1.4e-130 469.9 303 82.5
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.5e-130 469.2 303 82.2
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.5e-130 469.2 303 81.2
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 5.5e-130 468.0 313 80.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 7.1e-130 467.6 303 80.2
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 7.1e-130 467.6 312 79.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.6e-129 466.5 302 80.1
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 2.1e-129 466.1 304 79.9
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 3.5e-129 465.3 301 80.1
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 3.5e-129 465.3 305 80.3
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 4.6e-129 464.9 304 83.2
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 6.1e-129 464.5 304 82.9
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.0e-128 463.8 305 80.0
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.0e-128 463.8 306 82.7
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.3e-128 463.4 304 83.2
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 2.3e-128 462.6 307 83.1
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.0e-128 462.2 304 77.6
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 3.9e-128 461.8 303 82.2
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.9e-128 461.8 305 79.7
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.9e-128 461.8 305 79.7
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 3.9e-128 461.8 303 82.2
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.1e-127 460.3 303 80.2
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.5e-127 459.9 305 79.7
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.9e-127 459.5 304 82.6
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.4e-127 457.6 305 78.7
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 9.7e-127 457.2 311 77.2
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 9.7e-127 457.2 304 82.2
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 9.7e-127 457.2 306 81.7
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 9.7e-127 457.2 304 82.2
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.3e-126 456.8 301 82.4
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.2e-126 456.1 305 81.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 3.7e-126 455.3 301 81.7
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 3.7e-126 455.3 303 81.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-125 453.8 302 81.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-125 453.8 302 80.1
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.4e-125 453.4 304 78.3
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.4e-125 453.4 302 77.5
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 4.1e-125 451.8 302 77.2
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 9.0e-125 450.7 304 76.6
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.5e-124 449.9 304 76.6
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 4.5e-124 448.4 302 80.8
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 4.5e-124 448.4 304 76.6
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.0e-123 447.2 302 80.8
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.3e-123 446.8 304 79.9
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-123 445.7 312 76.0
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-123 445.7 312 76.0
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-123 445.7 312 76.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.8e-123 445.3 304 80.9
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 6.5e-123 444.5 302 78.1
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 6.5e-123 444.5 302 77.5
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.4e-122 443.4 301 81.1
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.5e-122 442.6 304 77.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 5.5e-122 441.4 304 77.3
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 5.5e-122 441.4 304 74.7
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 7.2e-122 441.0 302 78.1
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.6e-121 439.9 304 79.3
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.1e-121 439.5 302 74.2
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 2.1e-121 439.5 304 77.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.1e-121 439.5 304 77.3
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 77.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 2.7e-121 439.1 303 77.2
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 2.7e-121 439.1 306 75.5
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 7.9e-121 437.6 298 77.9
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.0e-120 437.2 303 79.2
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.4e-120 436.8 302 77.5
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-120 436.4 302 79.1
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.8e-120 436.4 302 79.1
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.8e-120 436.4 302 79.1
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.8e-120 436.4 303 74.3
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.8e-120 436.4 304 77.3
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 3.0e-120 435.6 303 79.2
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.1e-120 434.9 280 84.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.3e-119 432.2 304 73.4
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 4.3e-119 431.8 302 74.8
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 5.7e-119 431.4 302 78.1
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 5.7e-119 431.4 302 76.2
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 7.4e-119 431.0 304 77.6
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.7e-118 429.9 306 77.8
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.2e-118 429.5 304 78.6
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.7e-118 428.7 302 74.5
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.7e-118 428.7 286 79.4
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 4.8e-118 428.3 314 74.5
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 6.3e-118 427.9 304 78.3
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.2e-116 423.7 304 73.0
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.2e-116 423.7 310 71.6
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.5e-116 423.3 302 73.8
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.7e-115 419.9 304 75.3
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 3.8e-115 418.7 308 72.7
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.9e-114 416.4 294 74.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.9e-114 416.4 302 75.5
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.0e-112 410.6 304 71.4
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.4e-112 410.2 302 77.2
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 4.4e-111 405.2 304 72.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.7e-110 403.3 299 71.9
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 4.8e-110 401.7 312 72.1
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 6.3e-110 401.4 302 72.8
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.4e-109 399.4 307 68.7
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 5.5e-106 388.3 308 66.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 3.3e-103 379.0 302 65.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 8.2e-102 374.4 303 67.7
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.3e-96 356.3 293 67.9
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 7.0e-93 344.7 303 60.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 7.2e-90 334.7 323 58.2
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.7e-87 325.1 303 61.7
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 3.1e-85 319.3 195 78.5
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.3e-83 313.2 303 56.1
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.1e-81 305.1 252 68.7
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-80 303.5 252 65.9
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.8e-77 293.5 298 54.4
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.3e-75 287.3 302 57.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 3.3e-66 256.1 308 49.4
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.1e-64 251.1 199 69.8
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.8e-64 250.4 134 90.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 3.0e-59 233.0 193 72.5
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.1e-59 232.3 194 69.6
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.1e-56 223.0 212 62.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 9.9e-55 218.0 271 53.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.1e-53 212.6 194 67.5
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 3.3e-50 203.0 308 45.5
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.8e-48 197.2 294 44.9
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.3e-42 176.0 168 65.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.8e-41 173.3 193 52.3
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 3.6e-41 172.9 231 50.6
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.9e-38 163.3 104 76.9
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.4e-37 161.0 110 75.5
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 8.1e-33 145.2 182 48.9
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.5e-31 141.0 109 64.2
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 4.5e-31 139.4 269 43.9
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.2e-28 131.3 154 59.1
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.5e-26 124.4 302 38.4
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.1e-25 120.6 302 37.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.0e-22 111.7 80 70.0
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 4.9e-22 109.4 80 67.5
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 5.5e-21 105.9 61 82.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 5.1e-19 99.4 63 76.2
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-18 97.8 116 61.2
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.9e-18 97.4 145 51.7
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-16 91.7 117 57.3
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 2.6e-15 87.0 98 64.3
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-13 80.9 99 59.6
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 6.7e-11 72.4 52 76.9


User provided reference genes

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