Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.1e-119 432.6 246 100.0
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.2e-87 327.0 303 61.7
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.8e-86 323.2 263 67.7
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.0e-86 322.4 301 61.5
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.2e-86 321.6 301 61.8
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.2e-86 321.6 301 61.8
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.6e-85 319.3 303 61.1
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.7e-84 316.6 265 65.3
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 3.7e-84 315.5 300 61.0
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 6.3e-84 314.7 267 65.2
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 1.8e-83 313.2 303 60.4
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 4.1e-83 312.0 193 82.4
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 5.3e-83 311.6 302 59.3
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 7.0e-83 311.2 304 58.9
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 9.1e-83 310.8 193 82.4
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.2e-82 310.5 193 82.4
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.2e-82 310.5 193 82.4
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.2e-82 310.5 303 61.1
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.2e-82 310.5 193 81.9
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.6e-82 310.1 302 58.6
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.6e-82 310.1 304 59.5
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.6e-82 310.1 301 58.8
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.0e-82 309.7 294 59.2
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.7e-82 309.3 304 58.9
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 4.5e-82 308.5 301 58.1
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 5.9e-82 308.1 304 58.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.0e-81 307.4 193 80.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.3e-81 307.0 264 64.4
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.3e-81 307.0 193 80.8
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.3e-81 307.0 193 80.8
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.3e-81 307.0 304 58.6
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.3e-81 307.0 301 59.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.7e-81 306.6 302 57.9
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.2e-81 306.2 300 58.0
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.2e-81 306.2 193 81.9
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.9e-81 305.8 299 58.5
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.8e-81 305.4 302 57.9
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 5.0e-81 305.1 299 58.5
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 5.0e-81 305.1 302 58.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 8.5e-81 304.3 300 58.3
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.1e-80 303.9 297 59.3
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-80 303.9 300 57.7
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.1e-80 303.9 191 80.1
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.5e-80 303.5 304 58.2
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.9e-80 303.1 193 78.8
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.5e-80 302.8 301 58.1
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 3.2e-80 302.4 301 58.5
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 3.2e-80 302.4 301 57.5
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.2e-80 302.4 193 80.8
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 4.2e-80 302.0 300 58.0
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 5.5e-80 301.6 188 80.9
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 5.5e-80 301.6 301 57.1
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 7.2e-80 301.2 193 79.3
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 9.4e-80 300.8 302 57.6
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 9.4e-80 300.8 193 79.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 9.4e-80 300.8 191 78.5
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.2e-79 300.4 298 58.4
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.2e-79 300.4 301 56.8
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.6e-79 300.1 191 78.5
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.6e-79 300.1 191 78.5
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 2.1e-79 299.7 302 57.0
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.1e-79 299.7 300 57.0
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.1e-79 299.7 300 56.3
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.7e-79 299.3 299 57.9
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.7e-79 299.3 298 57.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 2.7e-79 299.3 298 57.0
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.6e-79 298.9 300 57.7
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.6e-79 298.9 193 78.2
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 4.7e-79 298.5 189 79.4
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 4.7e-79 298.5 299 56.9
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 6.1e-79 298.1 305 55.4
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 8.0e-79 297.7 193 79.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.0e-79 297.7 193 79.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.0e-79 297.7 193 79.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 8.0e-79 297.7 300 57.0
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.0e-78 297.4 193 79.3
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.4e-78 297.0 307 56.0
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.4e-78 297.0 307 56.0
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.4e-78 297.0 307 56.0
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.4e-78 297.0 302 57.3
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.8e-78 296.6 195 77.9
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.8e-78 296.6 296 57.4
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.3e-78 296.2 191 77.0
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 2.3e-78 296.2 193 77.2
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.0e-78 295.8 193 76.7
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 4.0e-78 295.4 193 78.2
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 5.2e-78 295.0 298 57.4
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 5.2e-78 295.0 298 57.4
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 5.2e-78 295.0 298 57.4
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 5.2e-78 295.0 191 77.0
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 5.2e-78 295.0 295 57.3
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 6.8e-78 294.7 299 57.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 8.8e-78 294.3 297 56.9
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 8.8e-78 294.3 193 77.2
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.2e-77 293.9 296 57.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.5e-77 293.5 299 56.9
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 2.0e-77 293.1 300 56.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.4e-77 292.4 189 77.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.2e-76 289.7 299 56.2
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.2e-76 289.7 299 55.5
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 2.8e-76 289.3 302 55.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 3.7e-76 288.9 296 56.1
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 4.8e-76 288.5 189 76.7
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 5.4e-75 285.0 302 55.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 9.1e-75 284.3 300 54.3
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.2e-74 283.9 189 76.7
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 4.5e-74 282.0 189 77.8
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 5.9e-74 281.6 244 66.8
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 7.7e-74 281.2 302 54.6
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 7.2e-72 274.6 297 54.9
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.1e-71 273.1 188 76.1
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 8.0e-71 271.2 188 70.7
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.0e-70 270.8 193 71.0
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.1e-67 260.8 191 68.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.8e-67 260.0 297 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.3e-65 253.8 189 71.4
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 2.1e-63 246.5 295 49.5
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.6e-63 245.7 264 53.8
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 4.7e-63 245.4 302 51.0
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 6.8e-62 241.5 190 66.8
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-59 233.4 199 63.8
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.4e-59 233.0 301 47.2
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 5.9e-58 228.4 134 82.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 5.6e-56 221.9 191 61.3
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 2.8e-55 219.5 248 53.2
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.0e-50 203.4 235 52.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.2e-44 183.3 194 53.1
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 4.3e-40 169.1 242 44.2
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.6e-37 158.3 193 49.7
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 3.5e-34 149.4 199 49.7
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.7e-33 147.1 190 50.5
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 3.9e-33 146.0 101 67.3
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 4.3e-32 142.5 111 67.6
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 7.8e-26 121.7 84 67.9
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.1e-24 117.9 91 62.6
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.3e-24 115.9 164 45.7
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.3e-24 115.9 194 42.3
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.6e-23 114.0 175 44.6
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 6.2e-23 112.1 80 72.5
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-19 100.1 61 75.4
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 6.0e-18 95.5 194 38.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.0e-17 94.7 59 74.6
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 3.0e-17 93.2 61 68.9
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.0e-17 93.2 59 72.9
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 4.3e-16 89.4 68 63.2
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 3.6e-15 86.3 68 66.2
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 3.6e-15 86.3 68 66.2
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 4.8e-15 85.9 180 42.2
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 9.0e-14 81.6 56 78.6
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-09 68.2 55 70.9


User provided reference genes

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