Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 2.2e-129 465.7 243 100.0
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.4e-112 409.8 241 87.1
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 4.1e-112 408.3 243 88.5
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 1.1e-109 400.2 243 87.2
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.9e-105 384.8 243 83.1
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 4.9e-105 384.8 243 83.1
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 9.2e-104 380.6 243 80.7
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.8e-103 377.5 243 81.1
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.1e-101 373.6 250 78.4
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 3.9e-94 348.6 243 75.7
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 3.1e-91 339.0 246 73.6
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 4.0e-91 338.6 184 90.2
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 3.4e-90 335.5 188 89.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 1.7e-89 333.2 186 87.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 2.2e-89 332.8 184 89.7
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 4.9e-89 331.6 245 73.1
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 8.4e-89 330.9 244 72.1
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.4e-89 330.9 182 88.5
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.4e-88 330.1 186 87.1
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 2.4e-88 329.3 179 89.4
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 5.4e-88 328.2 191 85.3
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 7.1e-88 327.8 184 86.4
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.6e-87 326.6 225 76.0
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 2.1e-87 326.2 177 88.1
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.1e-87 326.2 179 87.7
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.7e-87 325.9 189 84.7
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.7e-87 325.9 190 85.3
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.7e-87 325.9 187 85.6
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 3.5e-87 325.5 183 87.4
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 3.5e-87 325.5 192 83.3
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 3.5e-87 325.5 189 85.7
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 3.5e-87 325.5 188 85.6
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 3.5e-87 325.5 179 89.4
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.6e-87 325.1 237 71.7
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 4.6e-87 325.1 181 87.3
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 6.0e-87 324.7 181 87.3
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 7.9e-87 324.3 187 85.6
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.3e-86 323.6 182 85.7
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.3e-86 323.6 186 86.6
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 1.3e-86 323.6 181 87.8
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.8e-86 323.2 182 87.9
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.8e-86 323.2 189 85.7
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.8e-86 323.2 192 82.3
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.3e-86 322.8 186 85.5
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.3e-86 322.8 190 85.3
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 2.3e-86 322.8 186 85.5
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 3.0e-86 322.4 182 85.2
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 3.0e-86 322.4 189 83.6
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.9e-86 322.0 182 86.8
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.9e-86 322.0 188 83.0
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 5.1e-86 321.6 236 70.8
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 5.1e-86 321.6 227 73.6
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.1e-86 321.6 180 87.8
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 6.7e-86 321.2 183 84.7
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 8.7e-86 320.9 244 69.3
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-85 320.5 184 85.3
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.1e-85 320.5 180 87.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.1e-85 320.5 190 83.2
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.1e-85 320.5 189 83.6
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.1e-85 320.5 183 86.3
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-85 320.1 224 72.3
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.5e-85 320.1 243 69.1
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 1.5e-85 320.1 184 84.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.5e-85 320.1 180 87.2
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.5e-85 320.1 180 87.2
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.9e-85 319.7 180 86.7
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.9e-85 319.7 231 71.0
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.5e-85 319.3 188 83.0
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 3.3e-85 318.9 239 70.3
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 4.3e-85 318.5 233 71.2
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.6e-85 318.2 245 69.4
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 5.6e-85 318.2 181 85.1
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 7.4e-85 317.8 244 70.9
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 7.4e-85 317.8 182 84.6
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 9.6e-85 317.4 224 72.3
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 9.6e-85 317.4 185 84.9
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 9.6e-85 317.4 181 84.5
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.6e-84 316.6 182 85.2
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.6e-84 316.6 177 86.4
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.6e-84 316.6 242 69.8
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.1e-84 316.2 201 80.1
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 2.1e-84 316.2 242 67.4
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 3.7e-84 315.5 184 82.1
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 3.7e-84 315.5 239 70.3
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 3.7e-84 315.5 184 84.8
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 3.7e-84 315.5 184 84.8
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 4.8e-84 315.1 187 83.4
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 6.2e-84 314.7 186 82.8
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 8.1e-84 314.3 247 67.2
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-83 313.5 237 70.5
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-83 313.5 183 84.2
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 2.4e-83 312.8 177 85.9
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 2.4e-83 312.8 177 85.3
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 5.3e-83 311.6 237 67.9
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 5.3e-83 311.6 172 85.5
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.2e-82 310.5 184 83.2
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.5e-82 310.1 191 80.1
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 3.4e-82 308.9 232 70.3
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 3.4e-82 308.9 162 90.7
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 2.2e-81 306.2 207 75.4
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 3.2e-80 302.4 204 75.5
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 7.1e-80 301.2 187 79.1
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 2.1e-79 299.7 186 79.6
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.1e-79 299.7 173 84.4
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.0e-78 297.4 184 78.8
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.0e-78 297.4 156 89.1
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 3.0e-78 295.8 179 79.3
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.6e-76 290.0 192 76.6
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.9e-75 284.6 168 83.9
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.5e-74 283.5 180 73.9
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 4.9e-73 278.5 292 57.5
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 3.9e-70 268.9 141 89.4
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 4.8e-68 261.9 231 63.2
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.4e-67 260.4 183 68.9
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 9.0e-67 257.7 184 71.7
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.5e-66 256.9 177 75.1
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 2.0e-66 256.5 159 70.4
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.8e-65 252.3 179 71.5
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 9.4e-64 247.7 188 64.4
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 6.9e-59 231.5 122 93.4
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.0e-57 227.6 160 71.2
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.0e-49 201.1 142 73.2
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.9e-48 196.8 114 81.6
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.1e-47 193.4 161 62.7
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 1.3e-44 184.1 109 81.7
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 2.4e-43 179.9 112 82.1
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 6.5e-41 171.8 109 77.1
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 6.5e-41 171.8 94 85.1
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.5e-40 170.6 114 77.2
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 9.4e-40 167.9 104 79.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-39 167.5 104 78.8
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 9.4e-32 141.4 78 91.0
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.6e-31 140.6 78 89.7
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 3.6e-31 139.4 124 61.3
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.0e-30 136.3 147 42.2
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 8.8e-30 134.8 75 92.0
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.1e-27 126.3 71 90.1
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.0e-22 109.8 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 2.9e-17 93.2 59 74.6
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-15 87.8 49 85.7
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 4.7e-15 85.9 92 54.3
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 3.5e-10 69.7 111 39.6
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 6.0e-10 68.9 47 68.1
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.9e-08 63.9 32 87.5
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3


User provided reference genes

Program Settings