Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 2.2e-107 392.5 227 100.0
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.1e-93 345.5 221 84.6
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 2.0e-92 342.8 224 81.7
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 2.7e-81 305.8 224 80.4
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.6e-73 280.0 230 69.1
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 2.1e-73 279.6 230 64.3
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.8e-72 276.6 232 67.7
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.8e-72 276.6 225 67.6
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 2.3e-72 276.2 216 65.7
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 8.7e-72 274.2 224 63.4
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.6e-70 270.0 203 66.5
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 2.1e-70 269.6 226 65.0
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.7e-70 268.9 224 63.4
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 6.2e-70 268.1 228 61.4
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 8.2e-70 267.7 228 68.4
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.1e-69 267.3 230 63.5
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 2.4e-69 266.2 230 66.1
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.4e-69 266.2 200 66.5
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 4.1e-69 265.4 208 67.8
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 4.1e-69 265.4 232 62.1
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 6.9e-69 264.6 231 64.1
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 9.0e-69 264.2 195 66.7
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.2e-68 263.8 229 59.8
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-68 263.8 195 72.8
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-68 263.8 225 67.1
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.2e-68 263.8 225 67.1
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.2e-68 263.8 195 72.8
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-68 263.8 217 65.0
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.2e-68 263.8 195 67.2
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-68 263.8 230 65.7
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 2.0e-68 263.1 229 62.9
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 2.0e-68 263.1 225 60.9
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.6e-68 261.2 235 61.7
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 7.6e-68 261.2 217 72.8
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.0e-67 260.8 224 65.6
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.0e-67 260.8 224 61.6
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.3e-67 260.4 195 65.6
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 5.0e-67 258.5 218 61.9
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.9e-66 256.5 224 59.8
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 2.5e-66 256.1 232 60.8
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 3.2e-66 255.8 228 64.9
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.2e-66 255.8 227 63.0
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 7.1e-66 254.6 217 68.7
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 9.3e-66 254.2 171 70.8
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.2e-65 253.8 224 58.9
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.7e-65 252.7 227 61.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.5e-65 252.3 197 68.0
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.8e-64 250.0 225 57.8
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 3.0e-64 249.2 225 59.6
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 3.9e-64 248.8 224 58.0
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.9e-64 248.8 224 62.9
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 6.7e-64 248.1 234 66.7
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 6.7e-64 248.1 222 63.1
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.5e-63 246.9 225 62.2
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.9e-63 246.5 226 57.5
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.9e-63 246.5 224 60.3
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 3.3e-63 245.7 225 69.8
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 5.7e-63 245.0 227 71.4
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 5.7e-63 245.0 226 61.9
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 5.7e-63 245.0 226 57.1
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 9.7e-63 244.2 228 57.9
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 1.3e-62 243.8 223 59.2
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.6e-62 243.4 145 81.4
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 2.2e-62 243.0 247 54.7
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 2.2e-62 243.0 225 58.2
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.2e-62 243.0 224 60.7
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 4.8e-62 241.9 223 57.8
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 8.2e-62 241.1 207 66.2
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.1e-61 240.7 227 62.6
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.4e-61 240.4 231 58.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 4.1e-61 238.8 241 53.9
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 4.1e-61 238.8 224 60.3
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.9e-61 238.0 202 61.9
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.7e-59 233.4 255 57.6
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 5.0e-59 231.9 146 71.9
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.9e-58 229.9 233 67.0
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 5.5e-58 228.4 112 89.3
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 9.4e-58 227.6 228 65.8
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 2.7e-57 226.1 230 57.4
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.7e-57 226.1 240 60.4
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 3.6e-57 225.7 112 90.2
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.6e-57 225.3 228 65.4
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 6.1e-57 224.9 242 57.9
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.8e-56 223.4 229 56.8
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 3.9e-56 222.2 226 54.4
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 8.8e-56 221.1 229 64.6
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.1e-55 220.7 225 60.9
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.5e-55 220.3 227 65.2
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 3.3e-55 219.2 241 58.5
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 7.4e-55 218.0 222 63.5
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 7.4e-55 218.0 145 71.0
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.7e-54 216.9 141 70.2
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 4.8e-54 215.3 222 61.7
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 2.4e-53 213.0 223 58.7
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.5e-50 203.0 194 55.2
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 7.9e-49 198.0 190 58.4
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 5.1e-48 195.3 98 88.8
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-45 187.2 154 59.1
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.3e-43 180.6 111 71.2
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 1.3e-43 180.6 111 71.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.1e-42 177.6 170 72.9
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 2.1e-41 173.3 149 55.0
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 2.3e-40 169.9 112 67.0
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.0e-39 166.8 146 58.9
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.0e-39 166.8 110 72.7
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 3.7e-38 162.5 145 51.7
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 6.3e-38 161.8 144 53.5
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.1e-29 131.3 98 66.3
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.9e-27 126.3 62 90.3
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-25 120.9 63 82.5
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 8.0e-25 118.2 101 58.4
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 7.5e-23 111.7 59 83.1
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 2.4e-21 106.7 78 65.4
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 2.0e-12 77.0 36 88.9
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 6.6e-11 72.0 176 28.4
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.5e-10 70.1 140 37.9
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.5e-10 68.2 58 60.3
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.5e-10 68.2 58 60.3
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 8.9e-08 61.6 161 34.2


User provided reference genes

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