Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04565 Corchorus olitorius HOM05D003365 ORTHO05D003899 1.5e-83 312.8 151 100.0
Thecc.01G226500 Theobroma cacao HOM05D003365 ORTHO05D003899 1.9e-43 179.5 188 53.2
Gorai.007G154100 Gossypium raimondii HOM05D003365 ORTHO05D003899 1.3e-26 123.6 130 52.3
Gohir.D11G143900 Gossypium hirsutum HOM05D003365 ORTHO05D003899 4.8e-26 121.7 174 44.3
Duzib138G0916 Durio zibethinus HOM05D003365 ORTHO05D003899 2.4e-25 119.4 129 52.7
Gohir.A11G137500 Gossypium hirsutum HOM05D003365 ORTHO05D003899 6.9e-25 117.9 129 51.2
Psat3g144800 Pisum sativum HOM05D003365 ORTHO05D003899 1.0e-20 104.0 140 42.9
Prupe.8G203400 Prunus persica HOM05D003365 ORTHO05D003899 1.4e-20 103.6 129 47.3
Medtr7g058430 Medicago truncatula HOM05D003365 ORTHO05D003899 1.8e-20 103.2 139 41.0
Lj2C1132T2 Lonicera japonica HOM05D003365 ORTHO05D003899 2.3e-20 102.8 151 42.4
TWI75G0239 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 3.0e-20 102.4 160 40.0
Sed0009490 Sechium edule HOM05D003365 ORTHO05D003899 8.8e-20 100.9 134 42.5
Dinv04652 Davidia involucrata HOM05D003365 ORTHO05D003899 2.0e-19 99.8 165 36.4
TWI36G1690 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 2.6e-19 99.4 158 39.2
Ca_30737_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 5.7e-19 98.2 139 40.3
RcHm_v2.0_Chr6g0284931 Rosa chinensis HOM05D003365 ORTHO05D003899 7.4e-19 97.8 147 46.9
Cpa.g.sc8.160 Carica papaya HOM05D003365 ORTHO05D003899 9.7e-19 97.4 154 42.9
Glyma.08G354400 Glycine max HOM05D003365 ORTHO05D003899 1.7e-18 96.7 150 40.0
Sabra03G0131000 Salix brachista HOM05D003365 ORTHO05D003899 1.7e-18 96.7 165 38.2
Phvul.008G125500 Phaseolus vulgaris HOM05D003365 ORTHO05D003899 2.2e-18 96.3 145 39.3
AUR62008908 Chenopodium quinoa HOM05D003365 ORTHO05D003899 2.8e-18 95.9 130 43.1
MD10G1165000 Malus domestica HOM05D003365 ORTHO05D003899 2.8e-18 95.9 143 39.9
Potri.003G178700 Populus trichocarpa HOM05D003365 ORTHO05D003899 3.7e-18 95.5 146 39.7
VMungo1383G0959 Vigna mungo HOM05D003365 ORTHO05D003899 3.7e-18 95.5 146 38.4
CiPaw.03G149600 Carya illinoinensis HOM05D003365 ORTHO05D003899 4.8e-18 95.1 150 41.3
Lalb_Chr12g0209691 Lupinus albus HOM05D003365 ORTHO05D003899 4.8e-18 95.1 138 42.8
Potri.002G241900 Populus trichocarpa HOM05D003365 ORTHO05D003899 6.3e-18 94.7 160 38.1
Gohir.D02G123200 Gossypium hirsutum HOM05D003365 ORTHO05D003899 8.2e-18 94.4 153 41.8
Gorai.005G131100 Gossypium raimondii HOM05D003365 ORTHO05D003899 8.2e-18 94.4 153 41.8
Lj1g0007670 Lotus japonicus HOM05D003365 ORTHO05D003899 1.1e-17 94.0 150 37.3
Glyma.18G171400 Glycine max HOM05D003365 ORTHO05D003899 1.4e-17 93.6 150 39.3
Prupe.1G006100 Prunus persica HOM05D003365 ORTHO05D003899 1.4e-17 93.6 150 41.3
MELO3C021013.2 Cucumis melo HOM05D003365 ORTHO05D003899 1.8e-17 93.2 140 40.0
Gohir.A03G094000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.8e-17 93.2 156 42.3
Thecc.04G205700 Theobroma cacao HOM05D003365 ORTHO05D003899 1.8e-17 93.2 158 41.1
arahy.Tifrunner.gnm1.ann1.E2CR6D Arachis hypogaea HOM05D003365 ORTHO05D003899 2.4e-17 92.8 157 36.3
ClCG09G009060 Citrullus lanatus HOM05D003365 ORTHO05D003899 3.1e-17 92.4 141 40.4
Sed0009580 Sechium edule HOM05D003365 ORTHO05D003899 3.1e-17 92.4 141 39.0
arahy.Tifrunner.gnm1.ann1.2FCG8X Arachis hypogaea HOM05D003365 ORTHO05D003899 4.1e-17 92.0 157 36.3
Manes.12G045750 Manihot esculenta HOM05D003365 ORTHO05D003899 5.3e-17 91.7 147 38.8
Ciclev10023514m.g Citrus clementina HOM05D003365 ORTHO05D003899 7.0e-17 91.3 145 41.4
CsaV3_7G025900 Cucumis sativus L. HOM05D003365 ORTHO05D003899 1.2e-16 90.5 141 39.7
Lj3g0005766 Lotus japonicus HOM05D003365 ORTHO05D003899 3.5e-16 89.0 145 37.9
Lalb_Chr19g0125591 Lupinus albus HOM05D003365 ORTHO05D003899 3.5e-16 89.0 151 37.1
COL.COLO4_10278 Corchorus olitorius HOM05D003365 ORTHO05D003899 4.5e-16 88.6 155 38.1
Potri.001G049300 Populus trichocarpa HOM05D003365 ORTHO05D003899 4.5e-16 88.6 152 39.5
TPR.G9032 Trifolium pratense HOM05D003365 ORTHO05D003899 7.7e-16 87.8 154 37.0
GSVIVG01028643001 Vitis vinifera HOM05D003365 ORTHO05D003899 7.7e-16 87.8 206 33.0
Migut.D00534 Erythranthe guttata HOM05D003365 ORTHO05D003899 1.3e-15 87.0 158 35.4
Sc05g0002210 Simmondsia chinensis HOM05D003365 ORTHO05D003899 2.9e-15 85.9 129 41.1
Medtr4g022320 Medicago truncatula HOM05D003365 ORTHO05D003899 3.8e-15 85.5 136 39.0
Atru.chr4.1724 Acer truncatum HOM05D003365 ORTHO05D003899 5.0e-15 85.1 160 37.5
Aa31sc154G60 Aethionema arabicum HOM05D003365 ORTHO05D003899 5.0e-15 85.1 133 42.1
Nitab4.5_0002428g0050 Nicotiana tabacum HOM05D003365 ORTHO05D003899 5.0e-15 85.1 143 35.7
EL10Ac7g17831 Beta vulgaris HOM05D003365 ORTHO05D003899 6.5e-15 84.7 130 40.8
Ciclev10004856m.g Citrus clementina HOM05D003365 ORTHO05D003899 6.5e-15 84.7 158 35.4
Rhsim09G0055000 Rhododendron simsii HOM05D003365 ORTHO05D003899 6.5e-15 84.7 157 35.7
Hund05541 Selenicereus undatus HOM05D003365 ORTHO05D003899 6.5e-15 84.7 129 41.9
Hund05542 Selenicereus undatus HOM05D003365 ORTHO05D003899 6.5e-15 84.7 129 41.9
Oeu006726.3 Olea europaea HOM05D003365 ORTHO05D003899 8.5e-15 84.3 145 37.9
Aqoxy2G03887 Aquilegia oxysepala HOM05D003365 ORTHO05D003899 1.1e-14 84.0 144 37.5
RcHm_v2.0_Chr4g0386021 Rosa chinensis HOM05D003365 ORTHO05D003899 1.1e-14 84.0 154 35.1
Duzib151G0831 Durio zibethinus HOM05D003365 ORTHO05D003899 1.5e-14 83.6 156 37.2
CSS0049236 Camellia sinensis var. sinensis HOM05D003365 ORTHO05D003899 1.9e-14 83.2 154 39.0
FAN12G0224 Fragaria x ananassa HOM05D003365 ORTHO05D003899 2.5e-14 82.8 150 38.7
FAN22G2379 Fragaria x ananassa HOM05D003365 ORTHO05D003899 3.2e-14 82.4 156 37.8
Gohir.D09G198000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 3.2e-14 82.4 157 35.0
Gorai.006G221600 Gossypium raimondii HOM05D003365 ORTHO05D003899 3.2e-14 82.4 155 34.8
Actinidia09483 Actinidia chinensis HOM05D003365 ORTHO05D003899 4.2e-14 82.0 160 36.9
THA.LOC104808785 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 4.2e-14 82.0 145 37.9
BolC7t41590H Brassica oleracea HOM05D003365 ORTHO05D003899 5.5e-14 81.6 132 40.9
Cc01_g17090 Coffea canephora HOM05D003365 ORTHO05D003899 5.5e-14 81.6 152 36.2
FAN12G1463 Fragaria x ananassa HOM05D003365 ORTHO05D003899 5.5e-14 81.6 156 38.5
Oeu022364.1 Olea europaea HOM05D003365 ORTHO05D003899 5.5e-14 81.6 146 39.0
vmacro14754 Vaccinium macrocarpon HOM05D003365 ORTHO05D003899 5.5e-14 81.6 129 38.8
CARHR101150 Cardamine hirsuta HOM05D003365 ORTHO05D003899 7.2e-14 81.3 136 39.7
DCAR_018569 Daucus carota HOM05D003365 ORTHO05D003899 7.2e-14 81.3 165 40.0
FvH4_4g00570 Fragaria vesca HOM05D003365 ORTHO05D003899 7.2e-14 81.3 157 38.9
MD04G1005700 Malus domestica HOM05D003365 ORTHO05D003899 7.2e-14 81.3 150 36.0
Carub.0003s2521 Capsella rubella HOM05D003365 ORTHO05D003899 1.2e-13 80.5 131 39.7
Gohir.A09G204300 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.2e-13 80.5 157 34.4
Nitab4.5_0004214g0020 Nicotiana tabacum HOM05D003365 ORTHO05D003899 1.6e-13 80.1 134 36.6
BcaC06g35760 Brassica carinata HOM05D003365 ORTHO05D003899 2.1e-13 79.7 129 38.8
Cc01_g17080 Coffea canephora HOM05D003365 ORTHO05D003899 2.1e-13 79.7 152 35.5
Thhalv10002593m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 2.1e-13 79.7 132 40.2
BcaC01g03254 Brassica carinata HOM05D003365 ORTHO05D003899 2.7e-13 79.3 129 38.8
Eucgr.L00369 Eucalyptus grandis HOM05D003365 ORTHO05D003899 2.7e-13 79.3 134 37.3
C03p54290 Brassica napus HOM05D003365 ORTHO05D003899 3.6e-13 79.0 129 38.8
BraA07t28528Z Brassica rapa HOM05D003365 ORTHO05D003899 3.6e-13 79.0 132 39.4
CANSAT01G3135 Cannabis sativa HOM05D003365 ORTHO05D003899 3.6e-13 79.0 169 33.1
HanXRQChr01g0022261 Helianthus annuus HOM05D003365 ORTHO05D003899 4.7e-13 78.6 132 37.9
TPR.G5612 Trifolium pratense HOM05D003365 ORTHO05D003899 4.7e-13 78.6 134 38.1
AT3G24800 Arabidopsis thaliana HOM05D003365 ORTHO05D003899 6.1e-13 78.2 138 35.5
PSO017G5557 Papaver somniferum HOM05D003365 ORTHO05D003899 6.1e-13 78.2 149 36.2
THA.LOC104804607 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 6.1e-13 78.2 158 35.4
BraA03t13524Z Brassica rapa HOM05D003365 ORTHO05D003899 1.0e-12 77.4 129 35.7
AL3G40570 Arabidopsis lyrata HOM05D003365 ORTHO05D003899 1.4e-12 77.0 144 34.7
BcaB06g26698 Brassica carinata HOM05D003365 ORTHO05D003899 1.4e-12 77.0 133 37.6
A07p07410 Brassica napus HOM05D003365 ORTHO05D003899 1.4e-12 77.0 129 38.0
A03p43940 Brassica napus HOM05D003365 ORTHO05D003899 1.8e-12 76.6 129 36.4
Eucgr.K02172 Eucalyptus grandis HOM05D003365 ORTHO05D003899 1.8e-12 76.6 155 36.1
BolC3t17715H Brassica oleracea HOM05D003365 ORTHO05D003899 2.3e-12 76.3 131 39.7
Nn3g19957 Nelumbo nucifera HOM05D003365 ORTHO05D003899 3.0e-12 75.9 153 31.4
SGA_v2.0_scaffold216G42379 Striga asiatica HOM05D003365 ORTHO05D003899 3.0e-12 75.9 138 37.0
TPR.G5559 Trifolium pratense HOM05D003365 ORTHO05D003899 3.0e-12 75.9 149 36.2
BcaB03g14565 Brassica carinata HOM05D003365 ORTHO05D003899 4.0e-12 75.5 129 35.7
Migut.N00374 Erythranthe guttata HOM05D003365 ORTHO05D003899 5.2e-12 75.1 134 40.3
C07p11180 Brassica napus HOM05D003365 ORTHO05D003899 6.7e-12 74.7 129 37.2
Thhalv10002569m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 6.7e-12 74.7 129 36.4
MSTRG.24620 Avicennia marina HOM05D003365 ORTHO05D003899 8.8e-12 74.3 143 37.1
Psat0s1248g0040 Pisum sativum HOM05D003365 ORTHO05D003899 8.8e-12 74.3 149 36.2
Sp3g22540 Schrenkiella parvula HOM05D003365 ORTHO05D003899 1.2e-11 73.9 134 36.6
SpUn0027_0020 Schrenkiella parvula HOM05D003365 ORTHO05D003899 1.2e-11 73.9 134 36.6
HPP92_012644 Vanilla planifolia HOM05D003365 ORTHO05D003899 1.2e-11 73.9 129 35.7
MSTRG.18389 Avicennia marina HOM05D003365 ORTHO05D003899 2.0e-11 73.2 159 30.2
Actinidia23724 Actinidia chinensis HOM05D003365 ORTHO05D003899 2.6e-11 72.8 160 34.4
Lsat_1_v5_gn_1_72781 Lactuca sativa HOM05D003365 ORTHO05D003899 2.6e-11 72.8 129 34.1
Ca_07518_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 3.3e-11 72.4 126 34.9
HanXRQChr15g0468271 Helianthus annuus HOM05D003365 ORTHO05D003899 4.4e-11 72.0 130 35.4
CAN.G500.11 Capsicum annuum HOM05D003365 ORTHO05D003899 7.5e-11 71.2 138 33.3
Os02g0621500 Oryza sativa ssp. japonica HOM05D003365 ORTHO05D003899 7.5e-11 71.2 135 34.1
ATR0736G227 Amborella trichopoda HOM05D003365 ORTHO05D003899 1.3e-10 70.5 129 31.0
HanXRQChr01g0022241 Helianthus annuus HOM05D003365 ORTHO05D003899 1.3e-10 70.5 129 36.4
Ah.08g214240 Amaranthus hybridus HOM05D000836 ORTHO05D000709 2.2e-10 69.7 123 36.6
Lsat_1_v5_gn_5_179340 Lactuca sativa HOM05D003365 ORTHO05D003899 4.8e-10 68.6 130 33.8
TAR365G1159 Trochodendron aralioides HOM05D003365 ORTHO05D003899 8.2e-10 67.8 129 41.1
Aa31LG4G13410 Aethionema arabicum HOM05D003365 ORTHO05D003899 1.1e-09 67.4 132 32.6
MBI10_g18941_MAGBIO Magnolia biondii HOM05D003365 ORTHO05D003899 1.1e-09 67.4 149 35.6
Zm00001eb247460 Zea mays HOM05D003365 ORTHO05D003899 4.1e-09 65.5 129 33.3
ECA248G1941 Erigeron canadensis HOM05D003365 ORTHO05D000452 1.2e-08 63.9 130 33.8
PGSC0003DMG400029661 Solanum tuberosum HOM05D003365 ORTHO05D003899 2.0e-08 63.2 139 33.8
SEGI_11490 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 1.7e-07 60.1 135 27.4
SEGI_15541 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 1.7e-07 60.1 135 27.4
Solyc09g091790.3 Solanum lycopersicum HOM05D003365 ORTHO05D003899 1.7e-07 60.1 143 30.8
Sopen09g034680 Solanum pennellii HOM05D003365 ORTHO05D003899 2.2e-07 59.7 147 29.3
ECA247G2566 Erigeron canadensis HOM05D003365 ORTHO05D003899 8.5e-07 57.8 134 34.3
FvH4_2g19100 Fragaria vesca HOM05D003365 ORTHO05D003899 1.1e-06 57.4 151 32.5
HanXRQChr09g0249321 Helianthus annuus HOM05D003365 ORTHO05D003899 1.1e-06 57.4 129 33.3
QL09p054586 Quercus lobata HOM05D003365 ORTHO05D003899 1.1e-06 57.4 112 35.7
SEGI_02131 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 7.2e-06 54.7 130 26.9


User provided reference genes

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