Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 3.4e-71 271.6 137 100.0
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 4.3e-42 174.9 113 84.1
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.8e-19 99.8 145 51.7
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 6.8e-19 97.8 143 51.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.6e-18 95.9 145 48.3
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.7e-18 94.7 143 49.7
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.7e-18 94.7 143 49.7
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 6.3e-17 91.3 149 45.0
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 8.3e-17 90.9 143 49.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 8.3e-17 90.9 144 45.1
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 7.0e-16 87.8 128 49.2
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.7e-15 85.9 146 46.6
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.3e-14 83.6 143 43.4
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.9e-14 82.4 125 46.4
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 6.5e-14 81.3 145 44.1
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 6.5e-14 81.3 125 45.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 8.5e-14 80.9 146 43.8
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.1e-13 80.5 144 45.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.2e-13 79.0 127 48.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.2e-13 79.0 146 43.8
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.2e-13 79.0 146 43.8
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 3.2e-13 79.0 128 48.4
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 3.2e-13 79.0 142 41.5
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.2e-13 78.6 142 45.1
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 5.5e-13 78.2 141 42.6
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 5.5e-13 78.2 146 43.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 9.4e-13 77.4 125 48.0
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 9.4e-13 77.4 126 47.6
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.2e-12 77.0 125 48.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.2e-12 77.0 125 48.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.2e-12 77.0 125 48.0
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.2e-12 77.0 126 47.6
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.2e-12 77.0 146 43.2
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 1.2e-12 77.0 146 43.2
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.6e-12 76.6 141 42.6
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 2.1e-12 76.3 140 44.3
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 2.1e-12 76.3 144 41.7
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.1e-12 76.3 129 48.1
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 2.1e-12 76.3 149 42.3
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.1e-12 76.3 146 41.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.6e-12 75.5 126 46.8
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 4.7e-12 75.1 146 42.5
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.0e-11 73.9 128 44.5
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.4e-11 73.6 122 45.1
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.4e-11 73.6 146 41.8
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 4.0e-11 72.0 152 41.4
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.0e-11 72.0 117 46.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 4.0e-11 72.0 117 47.9
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 8.8e-11 70.9 132 43.9
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 8.8e-11 70.9 128 46.1
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 8.8e-11 70.9 146 41.1
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.2e-10 70.5 138 41.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.2e-10 70.5 129 46.5
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.2e-10 70.5 81 54.3
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.5e-10 70.1 136 40.4
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 2.0e-10 69.7 148 40.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 2.0e-10 69.7 148 40.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 2.0e-10 69.7 148 40.5
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.0e-10 69.7 142 42.3
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.0e-10 69.7 127 46.5
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.6e-10 69.3 144 42.4
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.6e-10 69.3 127 41.7
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.6e-10 69.3 146 40.4
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 3.4e-10 68.9 128 46.1
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.4e-10 68.9 129 45.7
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 4.4e-10 68.6 127 44.1
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.4e-10 68.6 130 47.7
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 4.4e-10 68.6 81 51.9
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 4.4e-10 68.6 136 41.2
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 7.5e-10 67.8 144 37.5
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 9.8e-10 67.4 138 39.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 9.8e-10 67.4 122 47.5
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 9.8e-10 67.4 79 49.4
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 9.8e-10 67.4 127 42.5
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 9.8e-10 67.4 127 42.5
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 9.8e-10 67.4 127 42.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 9.8e-10 67.4 122 44.3
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.3e-09 67.0 123 42.3
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.3e-09 67.0 135 40.7
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 2.2e-09 66.2 128 40.6
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 2.2e-09 66.2 105 46.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-09 66.2 126 41.3
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 2.8e-09 65.9 128 41.4
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.8e-09 65.9 79 54.4
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 3.7e-09 65.5 129 39.5
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 6.3e-09 64.7 142 37.3
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 6.3e-09 64.7 97 48.5
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 8.3e-09 64.3 135 39.3
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 8.3e-09 64.3 127 41.7
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 8.3e-09 64.3 123 43.9
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.1e-08 63.9 128 40.6
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.1e-08 63.9 129 41.9
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-08 63.9 129 41.9
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-08 63.9 129 41.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-08 63.9 129 41.9
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.4e-08 63.5 126 42.1
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.4e-08 63.5 135 38.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.4e-08 63.5 143 37.8
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.8e-08 63.2 135 38.5
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.8e-08 63.2 80 52.5
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.4e-08 62.8 107 43.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.4e-08 62.8 127 41.7
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 3.1e-08 62.4 138 39.1
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 3.1e-08 62.4 139 38.1
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.1e-08 62.4 140 38.6
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 4.1e-08 62.0 141 36.2
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 4.1e-08 62.0 81 50.6
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 4.1e-08 62.0 140 39.3
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 9.1e-08 60.8 138 34.8
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 9.1e-08 60.8 141 39.0
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.2e-07 60.5 112 41.1
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.2e-07 60.5 152 38.2
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.6e-07 60.1 141 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.0e-07 59.7 136 37.5
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 2.0e-07 59.7 137 39.4
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.5e-07 58.5 128 38.3
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 7.7e-07 57.8 119 44.5
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 2.3e-06 56.2 96 46.9
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.9e-06 55.8 121 39.7
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 8.6e-06 54.3 44 59.1


User provided reference genes

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