Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0422 Ceratophyllum demersum HOM05D000142 ORTHO05D003173 3.8e-76 288.1 147 100.0
CDE11G0914 Ceratophyllum demersum HOM05D000086 ORTHO05D000431 9.1e-46 187.2 97 94.8
MBI04_g33879_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D003173 1.3e-15 87.0 96 50.0
MD06G1035700 Malus domestica HOM05D000142 ORTHO05D003173 1.7e-15 86.7 90 48.9
TAR375G0415 Trochodendron aralioides HOM05D000142 ORTHO05D003173 1.1e-14 84.0 79 49.4
CANSAT21G2381 Cannabis sativa HOM05D000142 ORTHO05D003173 9.2e-14 80.9 130 38.5
CiPaw.12G064600 Carya illinoinensis HOM05D000142 ORTHO05D003173 1.2e-13 80.5 129 38.0
Sed0006524 Sechium edule HOM05D000142 ORTHO05D003173 1.2e-13 80.5 126 38.9
Hma1.2p1_0574F.1_g181540 Hydrangea macrophylla HOM05D000142 ORTHO05D003173 3.5e-13 79.0 102 40.2
Hma1.2p1_1379F.1_g279190 Hydrangea macrophylla HOM05D000142 ORTHO05D003173 3.5e-13 79.0 102 40.2
QL12p004923 Quercus lobata HOM05D000142 ORTHO05D003173 3.5e-13 79.0 98 41.8
CARHR129560 Cardamine hirsuta HOM05D000142 ORTHO05D003173 5.9e-13 78.2 151 33.8
Medtr5g030020 Medicago truncatula HOM05D000142 ORTHO05D003173 5.9e-13 78.2 138 39.1
vmacro00322 Vaccinium macrocarpon HOM05D000142 ORTHO05D003173 5.9e-13 78.2 93 40.9
Manes.17G010200 Manihot esculenta HOM05D000142 ORTHO05D003173 1.0e-12 77.4 156 36.5
Oeu006239.1 Olea europaea HOM05D000142 ORTHO05D003173 1.0e-12 77.4 142 36.6
AL4G31450 Arabidopsis lyrata HOM05D000142 ORTHO05D003173 1.3e-12 77.0 71 50.7
Prupe.5G034000 Prunus persica HOM05D000142 ORTHO05D003173 1.3e-12 77.0 138 36.2
Sp4g17630 Schrenkiella parvula HOM05D000142 ORTHO05D003173 1.3e-12 77.0 79 46.8
TAR374G1376 Trochodendron aralioides HOM05D000142 ORTHO05D003173 1.3e-12 77.0 79 45.6
Zm00001eb072370 Zea mays HOM05D000142 ORTHO05D003173 1.3e-12 77.0 75 46.7
A04p26900 Brassica napus HOM05D000142 ORTHO05D003173 1.7e-12 76.6 70 48.6
C04p64290 Brassica napus HOM05D000142 ORTHO05D003173 1.7e-12 76.6 70 48.6
BolC4t27916H Brassica oleracea HOM05D000142 ORTHO05D003173 1.7e-12 76.6 70 48.6
BraA04t18189Z Brassica rapa HOM05D000142 ORTHO05D003173 1.7e-12 76.6 70 48.6
AT2G35410 Arabidopsis thaliana HOM05D000142 ORTHO05D003173 2.3e-12 76.3 70 50.0
RcHm_v2.0_Chr7g0210041 Rosa chinensis HOM05D000142 ORTHO05D003173 2.3e-12 76.3 99 42.4
Sabra01G0109900 Salix brachista HOM05D000142 ORTHO05D003173 2.3e-12 76.3 85 43.5
Aa31LG9G15420 Aethionema arabicum HOM05D000142 ORTHO05D003173 2.9e-12 75.9 95 40.0
CDE06G0116 Ceratophyllum demersum HOM05D000142 ORTHO05D003173 2.9e-12 75.9 141 39.0
ClCG10G001490 Citrullus lanatus HOM05D000142 ORTHO05D003173 2.9e-12 75.9 130 38.5
Cc08_g02910 Coffea canephora HOM05D000142 ORTHO05D003173 2.9e-12 75.9 144 36.8
Thhalv10016986m.g Eutrema salsugineum HOM05D000142 ORTHO05D003173 2.9e-12 75.9 88 45.5
BcaC02g07715 Brassica carinata HOM05D000142 ORTHO05D003173 3.8e-12 75.5 70 48.6
CsaV3_3G001570 Cucumis sativus L. HOM05D000142 ORTHO05D003173 3.8e-12 75.5 129 37.2
Oeu006238.1 Olea europaea HOM05D000142 ORTHO05D003173 3.8e-12 75.5 139 37.4
BcaB06g28841 Brassica carinata HOM05D000142 ORTHO05D003173 5.0e-12 75.1 75 46.7
Cfa012454 Carpinus fangiana HOM05D000142 ORTHO05D003173 6.6e-12 74.7 118 38.1
Carub.0004s1709 Capsella rubella HOM05D000142 ORTHO05D003173 8.6e-12 74.3 71 47.9
Dinv28967 Davidia involucrata HOM05D000142 ORTHO05D003173 8.6e-12 74.3 70 47.1
Haze_08213 Corylus avellana HOM05D000142 ORTHO05D003173 1.1e-11 73.9 132 37.9
DCAR_004294 Daucus carota HOM05D000142 ORTHO05D003173 1.1e-11 73.9 78 44.9
Atru.chr6.1677 Acer truncatum HOM05D000142 ORTHO05D003173 1.5e-11 73.6 109 37.6
COL.COLO4_17006 Corchorus olitorius HOM05D000142 ORTHO05D003173 1.5e-11 73.6 141 32.6
Potri.001G141300 Populus trichocarpa HOM05D000142 ORTHO05D003173 1.5e-11 73.6 143 34.3
PGR031G1255 Punica granatum HOM05D000142 ORTHO05D003173 1.5e-11 73.6 88 40.9
SGA_v2.0_scaffold36G14309 Striga asiatica HOM05D000142 ORTHO05D003173 1.5e-11 73.6 133 33.8
Ah.07g200540 Amaranthus hybridus HOM05D000142 ORTHO05D003173 1.9e-11 73.2 89 42.7
Hund11230 Selenicereus undatus HOM05D000142 ORTHO05D003173 1.9e-11 73.2 76 48.7
FAN13G0205 Fragaria x ananassa HOM05D000142 ORTHO05D003173 2.5e-11 72.8 144 36.8
Nn6g33572 Nelumbo nucifera HOM05D000142 ORTHO05D003173 2.5e-11 72.8 131 35.9
MELO3C013843.2 Cucumis melo HOM05D000142 ORTHO05D003173 3.3e-11 72.4 130 36.2
Glyma.01G017400 Glycine max HOM05D000142 ORTHO05D003173 3.3e-11 72.4 149 34.2
ATR0665G230 Amborella trichopoda HOM05D000142 ORTHO05D003173 4.3e-11 72.0 64 53.1
CiPaw.11G094600 Carya illinoinensis HOM05D000142 ORTHO05D003173 4.3e-11 72.0 131 36.6
DCAR_008256 Daucus carota HOM05D000142 ORTHO05D003173 4.3e-11 72.0 130 34.6
Gohir.D11G029700 Gossypium hirsutum HOM05D000142 ORTHO05D003173 4.3e-11 72.0 140 32.9
Lj2g0016522 Lotus japonicus HOM05D000142 ORTHO05D003173 4.3e-11 72.0 138 32.6
Eucgr.D02207 Eucalyptus grandis HOM05D000142 ORTHO05D003173 5.6e-11 71.6 79 39.2
Gohir.A11G031000 Gossypium hirsutum HOM05D000142 ORTHO05D003173 5.6e-11 71.6 126 33.3
HanXRQChr13g0395131 Helianthus annuus HOM05D000142 ORTHO05D003173 5.6e-11 71.6 107 41.1
PSO782G4960 Papaver somniferum HOM05D000142 ORTHO05D003173 5.6e-11 71.6 68 48.5
GSVIVG01013146001 Vitis vinifera HOM05D000142 ORTHO05D003173 5.6e-11 71.6 79 40.5
EL10Ac5g12093 Beta vulgaris HOM05D000142 ORTHO05D003173 7.3e-11 71.2 135 34.1
CDE12G0553 Ceratophyllum demersum HOM05D000142 ORTHO05D003173 7.3e-11 71.2 38 86.8
AUR62007302 Chenopodium quinoa HOM05D000142 ORTHO05D003173 7.3e-11 71.2 144 37.5
FAN08G1774 Fragaria x ananassa HOM05D000142 ORTHO05D003173 7.3e-11 71.2 144 36.1
Nitab4.5_0006453g0020 Nicotiana tabacum HOM05D000142 ORTHO05D003173 7.3e-11 71.2 77 46.8
PSO063G1565 Papaver somniferum HOM05D000142 ORTHO05D003173 7.3e-11 71.2 68 48.5
Psat2g137080 Pisum sativum HOM05D000142 ORTHO05D003173 7.3e-11 71.2 127 34.6
Sc01g0007390 Simmondsia chinensis HOM05D000142 ORTHO05D003173 7.3e-11 71.2 108 38.0
THA.LOC104812753 Tarenaya hassleriana HOM05D000142 ORTHO05D003173 7.3e-11 71.2 92 40.2
HPP92_020965 Vanilla planifolia HOM05D000142 ORTHO05D003173 7.3e-11 71.2 74 47.3
Ciclev10012439m.g Citrus clementina HOM05D000142 ORTHO05D003173 9.5e-11 70.9 148 33.8
Migut.A01012 Erythranthe guttata HOM05D000142 ORTHO05D003173 9.5e-11 70.9 72 47.2
Cpa.g.sc665.1 Carica papaya HOM05D000142 ORTHO05D003173 1.2e-10 70.5 135 34.1
Glyma.09G205500 Glycine max HOM05D000142 ORTHO05D003173 1.2e-10 70.5 137 34.3
Gorai.007G032500 Gossypium raimondii HOM05D000142 ORTHO05D003173 1.2e-10 70.5 140 32.9
Sed0026800 Sechium edule HOM05D000142 ORTHO05D003173 1.2e-10 70.5 111 34.2
CSS0014445 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D003173 1.6e-10 70.1 62 50.0
CSS0015928 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D003173 1.6e-10 70.1 62 50.0
FvH4_5g22330 Fragaria vesca HOM05D000142 ORTHO05D003173 1.6e-10 70.1 144 35.4
Thecc.03G225700 Theobroma cacao HOM05D000142 ORTHO05D003173 1.6e-10 70.1 146 32.9
Duzib068G0809 Durio zibethinus HOM05D000142 ORTHO05D003173 2.1e-10 69.7 119 31.1
Duzib068G0998 Durio zibethinus HOM05D000142 ORTHO05D003173 2.1e-10 69.7 119 31.1
Sopen08g025360 Solanum pennellii HOM05D000142 ORTHO05D003173 2.1e-10 69.7 98 37.8
Solyc08g076840.3 Solanum lycopersicum HOM05D000142 ORTHO05D003173 3.6e-10 68.9 92 39.1
Ca_25202_v3 Cicer arietinum L. HOM05D000142 ORTHO05D003173 4.7e-10 68.6 132 37.9
FAN18G2486 Fragaria x ananassa HOM05D000142 ORTHO05D003173 8.0e-10 67.8 144 34.0
Lsat_1_v5_gn_3_18460 Lactuca sativa HOM05D000142 ORTHO05D003173 8.0e-10 67.8 129 35.7
FAN18G4534 Fragaria x ananassa HOM05D000142 ORTHO05D003173 1.4e-09 67.0 138 34.8
Aqoxy3G02321 Aquilegia oxysepala HOM05D000142 ORTHO05D003173 1.8e-09 66.6 138 31.9
ECA233G6107 Erigeron canadensis HOM05D000142 ORTHO05D003173 3.1e-09 65.9 128 35.9
Os04g0591000 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D003173 3.1e-09 65.9 65 43.1
PGSC0003DMG400017519 Solanum tuberosum HOM05D000142 ORTHO05D003173 3.1e-09 65.9 147 34.7
Gohir.A03G000053 Gossypium hirsutum HOM05D000142 ORTHO05D003173 4.0e-09 65.5 141 31.2
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 5.2e-09 65.1 130 33.1
Hma1.2p1_0303F.1_g119000 Hydrangea macrophylla HOM05D000142 ORTHO05D003173 5.2e-09 65.1 169 33.7
Lsat_1_v5_gn_6_4121 Lactuca sativa HOM05D000142 ORTHO05D003173 5.2e-09 65.1 136 33.8
VMungo1215G2702 Vigna mungo HOM05D000142 ORTHO05D003173 6.8e-09 64.7 140 33.6
HPP92_022110 Vanilla planifolia HOM05D000142 ORTHO05D003173 8.9e-09 64.3 135 35.6
arahy.Tifrunner.gnm1.ann1.DB3C02 Arachis hypogaea HOM05D000142 ORTHO05D003173 1.2e-08 63.9 62 51.6
arahy.Tifrunner.gnm1.ann1.NEF90H Arachis hypogaea HOM05D000142 ORTHO05D003173 1.2e-08 63.9 62 51.6
Eucgr.B00046 Eucalyptus grandis HOM05D000142 ORTHO05D003173 1.5e-08 63.5 132 32.6
TWI60G0791 Tripterygium wilfordii HOM05D000142 ORTHO05D003173 1.5e-08 63.5 136 34.6
HanXRQChr06g0167571 Helianthus annuus HOM05D000142 ORTHO05D003173 3.4e-08 62.4 88 37.5
Lalb_Chr05g0215971 Lupinus albus HOM05D000142 ORTHO05D003173 4.4e-08 62.0 107 32.7
Actinidia03367 Actinidia chinensis HOM05D000142 ORTHO05D003173 5.8e-08 61.6 71 39.4
ECA246G0701 Erigeron canadensis HOM05D000142 ORTHO05D003173 5.8e-08 61.6 114 33.3
TWI81G0579 Tripterygium wilfordii HOM05D000142 ORTHO05D003173 7.5e-08 61.2 137 31.4
Phvul.002G140400 Phaseolus vulgaris HOM05D000142 ORTHO05D003173 1.7e-07 60.1 145 32.4
CSS0025684 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D003173 2.9e-07 59.3 135 32.6
Gohir.D03G172600 Gossypium hirsutum HOM05D000142 ORTHO05D003173 2.9e-07 59.3 141 30.5
PGSC0003DMG400030840 Solanum tuberosum HOM05D000142 ORTHO05D003173 2.9e-07 59.3 121 33.1
SGA_v2.0_scaffold25G10780 Striga asiatica HOM05D000142 ORTHO05D001253 3.7e-07 58.9 90 36.7
CANSAT25G3832 Cannabis sativa HOM05D000142 ORTHO05D003173 6.4e-07 58.2 78 42.3
TPR.G31941 Trifolium pratense HOM05D000142 ORTHO05D003173 6.4e-07 58.2 145 33.1
Potri.001G340800 Populus trichocarpa HOM05D000142 ORTHO05D001253 1.1e-06 57.4 64 43.8
Lj4A727T38 Lonicera japonica HOM05D000142 ORTHO05D003173 1.4e-06 57.0 100 34.0
arahy.Tifrunner.gnm1.ann1.H1JF6T Arachis hypogaea HOM05D000142 ORTHO05D001253 1.9e-06 56.6 69 40.6
CsaV3_1G000940 Cucumis sativus L. HOM05D000142 ORTHO05D001253 1.9e-06 56.6 77 39.0
PGR142G1042 Punica granatum HOM05D000142 ORTHO05D001253 1.9e-06 56.6 89 37.1
Aqoxy5G03669 Aquilegia oxysepala HOM05D000142 ORTHO05D001253 2.4e-06 56.2 86 34.9
Sed0023054 Sechium edule HOM05D000142 ORTHO05D001253 2.4e-06 56.2 92 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3377 Anthoceros agrestis HOM05D000142 ORTHO05D001253 3.2e-06 55.8 59 47.5
HanXRQChr14g0451091 Helianthus annuus HOM05D000142 ORTHO05D001253 3.2e-06 55.8 161 34.2
Mapoly0183s0014 Marchantia polymorpha HOM05D000142 ORTHO05D001253 3.2e-06 55.8 64 45.3
CANSAT64G1739 Cannabis sativa HOM05D000142 ORTHO05D001253 4.1e-06 55.5 69 42.0
Migut.O00192 Erythranthe guttata HOM05D000142 ORTHO05D001253 4.1e-06 55.5 76 35.5
Lalb_Chr23g0273421 Lupinus albus HOM05D000142 ORTHO05D001253 4.1e-06 55.5 61 42.6
Sed0019431 Sechium edule HOM05D000142 ORTHO05D001253 4.1e-06 55.5 137 29.9
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 5.4e-06 55.1 99 33.3
A09p57780 Brassica napus HOM05D000845 ORTHO05D001925 5.4e-06 55.1 94 34.0
BraA09t41170Z Brassica rapa HOM05D000845 ORTHO05D001925 5.4e-06 55.1 94 34.0
MELO3C026246.2 Cucumis melo HOM05D000142 ORTHO05D001253 5.4e-06 55.1 77 37.7
Eucgr.B00177 Eucalyptus grandis HOM05D000142 ORTHO05D001253 5.4e-06 55.1 66 42.4
C08p41010 Brassica napus HOM05D000845 ORTHO05D011679 7.0e-06 54.7 94 34.0
BolC8t51664H Brassica oleracea HOM05D000845 ORTHO05D011679 7.0e-06 54.7 94 34.0
Glyma.04G190100 Glycine max HOM05D000142 ORTHO05D001253 7.0e-06 54.7 69 40.6
Manes.14G057600 Manihot esculenta HOM05D000142 ORTHO05D001253 7.0e-06 54.7 69 39.1
TAR633G0864 Trochodendron aralioides HOM05D000142 ORTHO05D007638 7.0e-06 54.7 152 31.6
MELO3C003546.2 Cucumis melo HOM05D000142 ORTHO05D003173 9.2e-06 54.3 128 30.5
ECA238G3176 Erigeron canadensis HOM05D000631 ORTHO05D000524 9.2e-06 54.3 142 29.6
Os09g0565200 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D001253 9.2e-06 54.3 86 33.7
THA.LOC104800386 Tarenaya hassleriana HOM05D000142 ORTHO05D001253 9.2e-06 54.3 69 39.1


User provided reference genes

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