Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 0.0e+00 1216.4 618 100.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.9e-231 805.1 584 70.2
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 6.6e-231 804.3 589 71.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.6e-224 781.6 516 75.8
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 4.6e-224 781.6 589 67.7
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.1e-220 770.4 586 68.4
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.4e-219 765.4 592 68.2
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 3.8e-218 761.9 631 65.9
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.4e-218 761.1 596 66.9
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.4e-218 761.1 596 66.9
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.4e-217 759.2 515 75.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 2.7e-216 755.7 586 67.7
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.3e-215 752.7 593 66.1
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 2.3e-215 752.7 596 65.9
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.5e-214 749.2 583 68.8
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 5.6e-214 748.0 582 67.0
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 2.4e-212 742.7 512 73.4
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 2.0e-211 739.6 540 69.4
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 4.4e-211 738.4 587 66.1
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.3e-210 736.9 515 72.8
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.7e-210 736.5 569 67.3
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 3.8e-210 735.3 585 67.2
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 4.9e-210 734.9 514 73.0
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 6.4e-210 734.6 518 71.4
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.1e-209 733.8 543 69.8
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.1e-209 733.8 589 66.6
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.1e-209 733.8 514 73.0
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.2e-209 732.3 580 65.2
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 5.4e-209 731.5 590 64.6
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.1e-208 729.6 560 67.7
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.5e-208 728.8 513 71.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 4.6e-208 728.4 559 67.6
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 6.0e-208 728.0 516 70.5
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 7.8e-208 727.6 617 62.4
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.3e-207 726.9 603 64.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.3e-207 726.9 515 70.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.7e-207 726.5 518 70.8
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.7e-207 726.5 581 65.7
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 3.0e-207 725.7 596 64.9
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 5.1e-207 724.9 514 70.0
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.6e-207 724.5 545 68.1
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.1e-206 723.8 586 65.9
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.5e-206 723.4 544 67.6
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.9e-206 723.0 582 64.9
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.5e-206 722.6 556 67.4
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.3e-206 722.2 586 64.3
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.3e-206 721.1 611 61.7
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.6e-205 719.9 510 71.6
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.6e-205 719.9 544 67.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.1e-205 719.5 510 71.8
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.1e-205 719.5 514 71.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 6.2e-205 718.0 585 64.8
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.1e-204 717.2 585 64.3
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.1e-204 717.2 577 63.6
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.4e-204 716.8 593 65.1
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.8e-204 716.5 566 65.2
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 2.4e-204 716.1 514 70.2
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 4.0e-204 715.3 525 69.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 6.9e-204 714.5 622 60.9
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 6.9e-204 714.5 598 64.2
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 9.0e-204 714.1 546 68.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.2e-203 713.8 514 69.5
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.6e-203 712.6 567 64.6
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 3.4e-203 712.2 546 66.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 9.9e-203 710.7 622 60.6
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 9.9e-203 710.7 541 66.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 9.9e-203 710.7 514 70.4
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.3e-202 710.3 560 66.2
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.9e-202 709.1 600 63.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 3.8e-202 708.8 555 65.2
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 4.9e-202 708.4 546 66.3
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 6.4e-202 708.0 545 67.7
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 6.4e-202 708.0 542 66.8
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 8.4e-202 707.6 513 69.6
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.4e-201 706.1 604 61.3
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.4e-201 706.1 522 69.0
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.1e-200 703.0 579 63.4
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 7.9e-200 701.0 556 64.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.3e-199 699.5 510 70.6
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 8.7e-199 697.6 522 68.4
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.1e-198 697.2 673 56.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.9e-198 696.4 584 64.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.9e-196 688.0 583 62.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.9e-194 682.6 588 61.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.9e-190 669.8 514 66.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 6.2e-189 664.8 466 73.2
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.2e-189 664.8 618 59.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 6.9e-188 661.4 604 58.3
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.9e-186 656.0 547 64.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.8e-183 646.7 513 65.3
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.9e-182 643.3 630 57.1
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 7.4e-182 641.3 573 60.6
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.6e-181 640.2 594 59.6
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.4e-180 637.1 540 62.4
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.8e-180 636.7 590 60.7
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 5.3e-180 635.2 541 62.7
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.9e-177 626.7 464 67.9
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.4e-174 614.8 543 60.4
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 7.7e-171 604.7 480 65.2
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.5e-170 601.3 567 58.9
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.6e-168 597.0 547 58.3
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 5.7e-166 588.6 570 55.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 2.4e-164 583.2 388 76.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.7e-154 550.4 477 61.4
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 3.0e-151 539.7 447 62.9
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-150 537.3 529 56.3
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.6e-138 495.0 445 56.2
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.7e-133 479.6 350 70.6
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 6.3e-133 478.8 591 47.7
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.5e-131 472.6 471 55.4
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 9.5e-129 464.9 484 50.0
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.1e-128 463.8 483 51.3
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.1e-124 451.4 493 50.3
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.4e-116 424.5 392 58.9
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.7e-115 420.2 386 60.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.3e-114 417.2 511 49.3
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.2e-109 400.6 474 51.5
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 7.1e-108 395.6 488 45.3
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.6e-106 389.0 267 73.0
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.9e-92 344.4 282 59.6
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 9.6e-81 305.4 240 65.8
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.8e-79 301.2 204 70.1
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 9.0e-71 272.3 202 64.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.3e-69 268.5 262 50.8
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.2e-69 267.7 279 52.3
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.0e-66 258.8 132 97.7
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.2e-64 251.1 173 69.9
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.5e-62 245.0 397 37.3
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.5e-57 228.4 176 62.5
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.2e-56 224.6 291 44.7
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 9.1e-55 219.2 163 68.1
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.4e-54 217.2 240 51.2
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.6e-51 208.4 118 89.0
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 6.5e-45 186.4 113 80.5
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.3e-42 177.9 274 40.5
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.4e-41 173.7 128 68.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.1e-39 167.5 177 53.1
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.3e-37 162.2 95 88.4
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.1e-31 141.0 122 55.7
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 7.7e-30 136.3 106 63.2
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.2e-29 134.8 268 35.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.7e-27 127.9 134 48.5
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.0e-25 121.7 124 51.6
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.4e-23 115.5 112 53.6
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.5e-22 110.5 233 36.5
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 7.7e-22 109.8 89 57.3
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.0e-21 109.4 89 57.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.0e-21 109.4 105 49.5
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.5e-20 105.5 269 31.6
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.5e-20 104.8 88 60.2
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.2e-17 95.9 56 87.5
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 2.4e-15 88.2 57 80.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 7.0e-15 86.7 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.6e-14 84.0 54 79.6
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-13 82.8 71 59.2
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.5e-12 78.2 249 26.9
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.0e-09 68.6 57 56.1
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 7.5e-09 66.6 108 37.0
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 3.7e-08 64.3 283 24.0
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.3e-08 63.2 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.1e-07 62.8 36 80.6


User provided reference genes

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