Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 3692.5 1922 100.0
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 3251.8 1859 91.4
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2132.5 1970 61.7
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2043.1 1957 59.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1988.4 1942 59.3
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1983.0 1837 60.2
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1973.0 1949 58.2
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1959.5 1943 58.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1953.7 1869 59.7
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1952.9 1939 58.6
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1951.4 1834 59.7
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1948.7 1958 57.9
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1947.2 1818 59.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1947.2 1973 58.4
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1937.5 1946 58.0
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1932.1 1900 58.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1931.4 1953 58.1
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1930.2 1953 57.9
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1927.9 1848 59.2
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1924.8 1899 58.9
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1914.8 1941 57.6
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1909.0 1894 58.6
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1902.1 1943 57.1
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1901.7 1907 57.8
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1900.2 1960 56.8
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1896.7 1848 58.1
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1895.9 1935 57.4
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1895.6 1928 57.4
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1894.4 1887 58.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1893.6 1933 57.5
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1892.1 1844 58.4
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1889.8 1948 56.8
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1887.5 1928 57.2
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1885.2 1930 56.9
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1885.2 1891 57.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1883.2 1920 57.9
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1880.1 1946 56.1
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1879.8 1934 56.5
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1879.8 1933 56.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1878.2 1893 57.6
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1874.0 1879 57.4
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1872.1 1916 56.8
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1869.4 1936 56.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1866.7 1928 57.6
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1866.3 1934 56.6
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1863.6 1929 56.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1857.4 1928 56.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1856.3 1936 56.4
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1855.9 1968 56.7
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1854.0 1965 56.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1851.3 1961 56.0
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1850.9 1799 57.8
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1850.5 1931 55.9
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1847.4 1930 56.3
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1846.2 1833 56.7
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1846.2 1848 56.4
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1845.1 1794 58.6
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1843.2 1949 55.4
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1842.8 2029 54.7
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1831.2 1960 55.4
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1830.5 1944 55.7
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1829.3 1677 60.9
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1828.9 1835 56.2
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1824.7 1946 55.4
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1819.7 1942 55.7
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1814.7 1940 55.4
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1810.0 1867 56.3
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1809.7 1937 55.6
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1806.6 1830 56.2
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1805.0 1856 55.7
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1803.1 1821 56.1
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1801.2 1959 54.6
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1800.8 1834 55.6
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1800.0 1833 56.5
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1795.8 1834 56.1
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1795.4 1902 55.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1791.9 1795 56.8
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1791.5 1946 54.3
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1769.2 1844 55.1
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1753.8 1930 54.9
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1745.3 1984 52.5
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1736.1 1912 55.6
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1735.3 1926 53.5
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1727.6 1781 57.3
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1715.7 1954 53.5
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1681.8 1833 53.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1676.4 1893 53.4
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1651.3 1942 51.4
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1613.6 1956 49.1
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1597.4 1912 49.3
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1583.5 1905 50.2
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1577.8 1731 53.3
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1569.3 1894 49.1
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1568.9 1883 49.1
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1568.1 1854 49.6
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1567.7 1883 49.1
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1565.8 1884 49.3
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1565.8 1893 49.5
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1554.3 1890 49.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1553.9 1870 49.7
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1549.3 1899 48.5
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1534.2 1893 48.3
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1534.2 1893 48.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1533.5 1890 48.4
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1530.0 1900 48.4
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1529.6 1902 48.2
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1521.5 1902 49.2
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1447.6 1943 47.1
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1431.0 1496 58.0
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1421.8 1872 46.9
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1421.8 1872 46.9
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1418.7 1851 47.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1395.9 1238 61.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1282.7 1350 53.0
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1277.3 1238 59.7
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1248.8 1875 44.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1199.5 1778 43.4
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1199.1 1235 56.5
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1194.5 1936 42.9
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1106.7 1077 59.4
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 9.3e-308 1061.2 1513 44.9
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 5.0e-277 959.1 929 57.6
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.1e-273 948.0 1030 57.7
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 7.4e-273 945.3 1732 39.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 6.5e-261 905.6 1335 47.0
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-249 868.2 786 61.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 5.9e-246 855.9 903 55.9
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.1e-244 851.7 1453 42.2
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 2.5e-244 850.5 857 57.4
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.0e-243 845.5 1837 34.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.3e-242 844.0 837 59.0
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 9.0e-186 656.0 660 55.2
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.4e-184 649.4 648 54.8
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.7e-172 609.4 606 58.4
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 6.3e-171 606.7 710 50.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.0e-149 534.6 499 57.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.8e-141 508.8 631 48.0
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.3e-139 500.4 445 64.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.5e-121 441.4 538 52.0
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.4e-114 419.5 1220 28.9
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.6e-113 416.0 532 50.9
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 6.0e-105 387.5 428 51.4
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.9e-79 302.8 2069 22.6
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.5e-75 287.7 634 33.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.0e-73 281.2 453 38.4
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 3.3e-71 275.4 478 39.1
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 8.2e-70 270.8 846 30.5
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-60 240.4 384 37.8
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.4e-56 226.9 261 55.9
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.4e-50 206.8 459 33.8
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.5e-50 204.9 226 58.8
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 5.0e-43 181.8 199 59.8
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.7e-38 165.6 190 46.8
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.5e-34 152.9 160 60.0
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.6e-28 133.7 182 58.8
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.6e-12 80.5 103 43.7
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.5e-10 73.9 51 64.7
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.8e-09 69.7 82 46.3
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 6.2e-09 68.6 172 36.6
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 6.2e-09 68.6 33 81.8
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 3.1e-08 66.2 99 45.5
MBI14_g11886_MAGBIO Magnolia biondii HOM05D056533 ORTHO05D018021 2.6e-07 63.2 42 81.0
MBI05_g22526_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D018021 7.5e-07 61.6 42 78.6
MBI05_g34595_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 7.5e-07 61.6 42 78.6
MBI08_g04317_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 3.7e-06 59.3 54 64.8


User provided reference genes

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