Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.4e-114 416.4 229 100.0
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.8e-104 382.9 229 92.1
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 1.1e-71 273.9 230 67.8
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 2.8e-70 269.2 230 68.7
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 3.7e-70 268.9 207 73.4
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 4.8e-70 268.5 237 67.5
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 1.4e-69 266.9 217 70.5
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 1.4e-69 266.9 235 67.2
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 1.8e-69 266.5 230 69.6
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 3.1e-69 265.8 231 67.1
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 3.1e-69 265.8 225 68.0
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 4.1e-69 265.4 210 71.0
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 4.1e-69 265.4 210 71.0
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 5.3e-69 265.0 237 66.2
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 5.3e-69 265.0 237 67.5
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 7.0e-69 264.6 230 67.8
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 7.0e-69 264.6 231 67.1
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 9.1e-69 264.2 230 67.0
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 1.2e-68 263.8 231 66.7
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.6e-68 263.5 230 65.7
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 1.6e-68 263.5 234 67.5
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 1.6e-68 263.5 230 66.1
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 5.9e-68 261.5 205 71.2
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 7.7e-68 261.2 230 67.0
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 1.3e-67 260.4 222 67.6
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 1.7e-67 260.0 227 65.6
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 1.7e-67 260.0 222 67.6
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 2.2e-67 259.6 232 67.2
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 2.2e-67 259.6 209 69.9
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 2.9e-67 259.2 176 80.1
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 3.8e-67 258.8 209 69.4
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 5.0e-67 258.5 177 79.7
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 6.5e-67 258.1 232 65.1
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 6.5e-67 258.1 207 72.0
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 6.5e-67 258.1 176 80.1
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 6.5e-67 258.1 230 63.0
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 6.5e-67 258.1 227 65.2
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 8.5e-67 257.7 222 66.2
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 8.5e-67 257.7 227 65.2
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 1.1e-66 257.3 237 63.3
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 1.1e-66 257.3 230 67.0
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 1.5e-66 256.9 207 70.0
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 1.5e-66 256.9 174 79.9
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 1.5e-66 256.9 210 68.6
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 1.9e-66 256.5 174 79.9
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.9e-66 256.5 236 63.6
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 1.9e-66 256.5 236 64.8
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 2.5e-66 256.1 231 64.5
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 3.2e-66 255.8 232 62.9
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 4.2e-66 255.4 253 62.5
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 5.5e-66 255.0 237 64.1
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 5.5e-66 255.0 232 62.5
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 7.2e-66 254.6 232 62.5
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 7.2e-66 254.6 211 67.8
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 7.2e-66 254.6 237 64.1
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 1.2e-65 253.8 230 63.9
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 1.6e-65 253.4 208 69.2
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 1.6e-65 253.4 232 63.4
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 1.6e-65 253.4 220 65.5
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 2.1e-65 253.1 212 67.0
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 2.7e-65 252.7 209 68.9
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 3.6e-65 252.3 183 75.4
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 3.6e-65 252.3 233 65.7
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 3.6e-65 252.3 213 66.7
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 4.7e-65 251.9 230 62.6
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 8.0e-65 251.1 174 78.7
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 8.0e-65 251.1 180 76.1
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 1.0e-64 250.8 237 62.9
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 1.8e-64 250.0 232 62.5
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.0e-64 249.2 208 68.8
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.0e-64 249.2 208 68.8
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 3.0e-64 249.2 211 68.2
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 4.0e-64 248.8 231 64.5
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 4.0e-64 248.8 211 66.4
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 8.8e-64 247.7 176 75.0
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 1.2e-63 247.3 236 62.3
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 1.5e-63 246.9 232 61.6
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 2.0e-63 246.5 231 62.8
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 2.0e-63 246.5 232 63.4
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 2.6e-63 246.1 237 62.0
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 4.4e-63 245.4 211 65.9
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 4.4e-63 245.4 188 73.4
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 4.4e-63 245.4 174 76.4
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 4.4e-63 245.4 243 62.1
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 5.7e-63 245.0 229 61.6
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 5.7e-63 245.0 229 61.6
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 5.7e-63 245.0 212 64.6
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 7.5e-63 244.6 174 75.9
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 7.5e-63 244.6 225 61.8
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 9.7e-63 244.2 231 62.8
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 2.8e-62 242.7 232 60.8
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 4.8e-62 241.9 232 62.5
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 6.3e-62 241.5 165 77.6
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 8.3e-62 241.1 249 59.8
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 1.4e-61 240.4 222 61.3
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.8e-61 240.0 232 59.1
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 1.8e-61 240.0 239 61.9
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 1.8e-61 240.0 166 79.5
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 1.8e-61 240.0 211 64.0
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 1.8e-61 240.0 211 64.5
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 2.4e-61 239.6 245 60.8
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 3.1e-61 239.2 207 66.2
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 5.3e-61 238.4 214 62.1
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 7.0e-61 238.0 217 62.2
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 1.0e-59 234.2 239 58.2
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.7e-59 233.4 230 61.3
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 2.2e-59 233.0 174 72.4
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 2.9e-59 232.6 174 72.4
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 6.5e-59 231.5 233 61.8
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 8.5e-59 231.1 186 70.4
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 1.9e-58 229.9 254 55.5
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 1.9e-58 229.9 237 61.2
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 2.5e-58 229.6 217 60.8
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 4.2e-58 228.8 231 61.5
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 4.2e-58 228.8 236 57.6
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 5.5e-58 228.4 174 71.3
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.6e-57 226.9 230 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 2.7e-57 226.1 213 61.0
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 4.7e-57 225.3 230 59.6
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 8.0e-57 224.6 174 71.3
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 1.4e-56 223.8 227 55.1
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 9.8e-55 217.6 194 64.4
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 9.8e-55 217.6 166 69.9
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 1.7e-54 216.9 205 57.6
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 4.8e-54 215.3 181 69.1
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 6.3e-54 214.9 250 54.8
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 5.4e-53 211.8 189 63.0
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 2.7e-52 209.5 197 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.7e-51 206.8 222 54.5
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.5e-50 203.0 338 42.6
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 3.3e-50 202.6 150 74.7
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 2.1e-49 199.9 207 59.9
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 2.1e-49 199.9 188 64.9
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 3.0e-48 196.1 175 64.0
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 4.0e-48 195.7 134 77.6
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 7.5e-47 191.4 237 53.2
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 5.9e-44 181.8 182 55.5
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 2.5e-42 176.4 264 45.5
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 1.8e-40 170.2 132 69.7
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 1.8e-40 170.2 132 69.7
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.0e-40 169.1 233 50.2
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 7.8e-36 154.8 103 83.5
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 8.6e-35 151.4 307 38.1
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 1.7e-30 137.1 174 45.4
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 2.2e-30 136.7 103 77.7
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.7e-27 127.1 85 77.6
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 3.3e-26 122.9 85 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 6.4e-22 108.6 87 69.0
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 3.2e-21 106.3 86 68.6
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 7.1e-21 105.1 169 45.6
FAN07G1696 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.7e-20 103.2 235 36.2
Actinidia06578 Actinidia chinensis HOM05D004285 ORTHO05D005176 1.1e-18 97.8 119 52.9
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 2.1e-17 93.6 203 34.5
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 1.1e-16 91.3 226 32.7
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 1.4e-16 90.9 144 37.5
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 3.1e-16 89.7 210 32.4
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 4.9e-14 82.4 93 51.6
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 3.2e-13 79.7 51 78.4
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 5.4e-13 79.0 51 78.4
A08p30650 Brassica napus HOM05D004285 ORTHO05D005176 1.6e-09 67.4 53 66.0
AagrBONN_evm.TU.Sc2ySwM_344.1025 Anthoceros agrestis HOM05D004285 ORTHO05D005176 3.1e-08 63.2 50 62.0
A06p05780 Brassica napus HOM05D004285 ORTHO05D005176 9.0e-08 61.6 55 58.2
C09p09560 Brassica napus HOM05D004285 ORTHO05D005176 9.0e-08 61.6 106 34.9
A06p32110 Brassica napus HOM05D004285 ORTHO05D005176 1.5e-07 60.8 55 58.2
MCO05G687 Micromonas commoda HOM05D001726 ORTHO05D001761 2.0e-07 60.5 205 29.8
Zm00001eb358220 Zea mays HOM05D001726 ORTHO05D001761 9.9e-07 58.2 180 31.1
CARHR204170 Cardamine hirsuta HOM05D004285 ORTHO05D005176 1.7e-06 57.4 35 77.1
Os09g0267600 Oryza sativa ssp. japonica HOM05D001726 ORTHO05D001761 2.2e-06 57.0 180 31.1
CBR_g44400 Chara braunii HOM05D001726 ORTHO05D001761 2.9e-06 56.6 160 29.4
Zm00001eb162120 Zea mays HOM05D001726 ORTHO05D001761 4.9e-06 55.8 217 29.5


User provided reference genes

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