Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.3e-162 574.3 296 100.0
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 2.0e-137 492.7 296 85.5
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 8.0e-134 480.7 297 82.8
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.8e-133 479.6 296 84.1
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.0e-132 476.1 297 82.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.6e-132 475.7 296 82.4
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.3e-131 473.4 302 79.5
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.7e-131 473.0 300 81.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.8e-131 472.2 300 81.0
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 8.3e-131 470.7 304 79.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.1e-130 470.3 302 80.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.8e-130 469.5 296 81.4
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 5.4e-130 468.0 300 79.7
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 5.4e-130 468.0 300 80.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 9.2e-130 467.2 301 77.7
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.2e-129 466.8 302 79.1
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.2e-129 466.8 300 80.3
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 304 79.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 304 79.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.6e-129 466.5 298 80.2
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.0e-129 466.1 304 78.9
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 4.5e-129 464.9 293 79.9
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 4.5e-129 464.9 304 78.6
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 4.5e-129 464.9 299 79.6
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 5.9e-129 464.5 302 78.5
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 5.9e-129 464.5 306 77.5
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.0e-128 463.8 298 79.5
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 297 79.5
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.3e-128 462.6 298 79.5
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 2.9e-128 462.2 303 77.6
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 5.0e-128 461.5 307 78.2
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.1e-127 460.3 300 77.0
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.5e-127 459.9 304 76.6
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.5e-127 459.1 297 80.1
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.5e-127 459.1 304 78.0
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 3.3e-127 458.8 303 77.9
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 4.3e-127 458.4 302 78.5
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 4.3e-127 458.4 299 77.9
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 9.5e-127 457.2 304 77.0
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.2e-126 456.8 301 77.4
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.2e-126 456.8 304 79.9
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.2e-126 456.8 302 79.8
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.2e-126 456.8 301 77.4
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.2e-126 456.8 296 79.7
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 4.7e-126 454.9 299 78.6
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 6.1e-126 454.5 300 77.3
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.0e-125 453.8 309 77.7
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-125 453.0 303 77.9
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.8e-125 453.0 303 77.9
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.3e-125 452.6 303 76.9
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 3.0e-125 452.2 299 77.9
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 5.2e-125 451.4 304 77.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 8.9e-125 450.7 299 77.6
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 8.9e-125 450.7 300 77.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 75.3
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.2e-124 450.3 302 76.2
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 2.6e-124 449.1 302 77.8
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.4e-124 448.7 303 77.2
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 3.4e-124 448.7 304 75.3
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 3.4e-124 448.7 305 76.4
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 5.7e-124 448.0 300 76.7
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 9.8e-124 447.2 302 76.2
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.9e-123 445.7 300 76.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 4.9e-123 444.9 304 75.3
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 4.9e-123 444.9 303 74.6
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 8.3e-123 444.1 300 74.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 8.3e-123 444.1 296 76.7
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.4e-122 443.4 302 74.2
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.4e-122 443.4 300 73.7
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.4e-122 442.6 303 74.9
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 7.0e-122 441.0 301 75.4
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 9.2e-122 440.7 301 73.8
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.0e-121 439.5 296 77.4
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 5.9e-121 438.0 296 76.0
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 5.9e-121 438.0 305 74.4
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 1.0e-120 437.2 307 73.6
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.0e-120 437.2 307 73.6
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.3e-120 436.8 304 74.0
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.3e-120 436.8 306 73.5
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.3e-120 436.8 307 73.3
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.3e-120 436.0 301 74.8
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 2.3e-120 436.0 306 72.9
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 2.3e-120 436.0 306 72.9
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 2.3e-120 436.0 306 72.9
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 3.0e-120 435.6 305 73.8
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 6.6e-120 434.5 306 71.9
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.1e-119 433.7 290 76.6
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-119 433.7 307 73.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.9e-119 433.0 304 73.0
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 3.3e-119 432.2 304 73.4
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 5.6e-119 431.4 283 78.1
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.0e-116 422.9 299 70.9
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 3.4e-116 422.2 298 72.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 5.8e-116 421.4 300 70.7
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.2e-115 419.5 301 71.8
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 3.7e-115 418.7 301 70.1
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 6.4e-115 417.9 303 70.3
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-114 417.2 300 70.0
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.4e-114 416.8 300 70.3
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 7.0e-114 414.5 296 69.6
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.6e-113 413.3 299 69.6
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.6e-113 413.3 299 69.6
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.6e-113 413.3 299 69.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.6e-113 413.3 303 70.3
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.6e-113 413.3 299 70.2
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 2.7e-113 412.5 303 70.0
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.7e-113 412.5 293 74.4
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.9e-112 408.7 305 69.5
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.3e-111 405.2 305 69.2
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.5e-108 396.7 312 66.7
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 2.6e-108 396.0 303 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.9e-107 392.5 295 70.2
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.9e-104 382.1 279 73.1
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 4.7e-102 375.2 301 66.4
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 8.4e-99 364.4 303 65.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 4.1e-98 362.1 284 69.7
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.1e-95 354.0 329 60.2
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.6e-94 350.1 301 60.8
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 2.3e-88 329.7 195 79.5
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 3.2e-82 309.3 292 57.5
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.1e-81 306.6 246 64.2
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.0e-80 304.3 299 55.9
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 2.1e-78 296.6 296 59.8
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.8e-78 296.2 296 57.4
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-77 294.3 246 62.6
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.0e-67 261.2 134 94.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 4.2e-66 255.8 295 49.8
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 5.7e-63 245.4 195 69.2
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.5e-60 237.3 271 50.6
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-54 216.9 188 60.1
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.8e-54 216.5 210 56.7
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.2e-49 201.1 288 46.2
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.0e-48 198.0 189 58.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 6.7e-48 195.3 313 42.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.4e-45 187.6 164 60.4
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.3e-43 181.0 222 49.5
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.9e-42 177.2 189 52.9
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 3.6e-41 172.9 197 48.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 8.8e-40 168.3 111 78.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 5.3e-37 159.1 104 72.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-34 151.4 180 47.8
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.5e-31 141.0 102 69.6
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 9.1e-29 131.7 218 42.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.7e-22 110.9 85 68.2
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 2.4e-21 107.1 77 68.8
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 3.1e-21 106.7 61 78.7
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 7.7e-20 102.1 296 31.4
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.9e-19 100.1 296 31.1
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 3.8e-19 99.8 141 50.4
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 5.5e-18 95.9 59 72.9
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 5.2e-16 89.4 112 44.6
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 4.4e-15 86.3 111 44.1
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 2.8e-14 83.6 94 58.5
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 1.2e-12 78.2 94 42.6
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 6.6e-11 72.4 79 55.7
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.2e-09 68.2 138 41.3


User provided reference genes

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