Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.2e-109 399.8 202 100.0
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 2.1e-85 319.3 195 81.0
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 4.4e-83 311.6 193 78.8
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 4.4e-83 311.6 193 78.8
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 2.4e-81 305.8 202 76.7
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 9.1e-81 303.9 195 77.4
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 1.6e-80 303.1 195 78.5
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 5.9e-80 301.2 194 76.8
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 5.0e-79 298.1 191 78.0
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 5.0e-79 298.1 192 78.1
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.1e-78 297.0 188 77.7
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.1e-78 297.0 190 75.8
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.5e-78 296.6 193 77.2
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.9e-78 296.2 192 78.1
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 9.5e-78 293.9 194 76.8
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 9.5e-78 293.9 199 75.4
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 2.1e-77 292.7 187 76.5
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 3.6e-77 292.0 187 78.1
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 6.1e-77 291.2 187 76.5
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 1.8e-76 289.7 188 76.1
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 2.3e-76 289.3 190 75.8
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 2.3e-76 289.3 194 75.3
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.3e-76 289.3 190 73.7
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.3e-76 289.3 194 73.2
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 3.0e-76 288.9 190 74.2
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 3.0e-76 288.9 192 76.0
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 5.2e-76 288.1 192 75.0
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 6.8e-76 287.7 194 72.7
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 8.9e-76 287.3 199 73.4
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 1.5e-75 286.6 198 75.3
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 1.5e-75 286.6 187 75.4
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.0e-75 286.2 201 71.6
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 2.0e-75 286.2 187 76.5
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 2.0e-75 286.2 194 72.7
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 2.0e-75 286.2 192 73.4
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 2.0e-75 286.2 197 73.6
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 3.4e-75 285.4 194 71.6
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 3.4e-75 285.4 195 73.3
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 3.4e-75 285.4 194 72.7
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 4.4e-75 285.0 194 72.2
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 7.5e-75 284.3 196 74.5
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 1.3e-74 283.5 188 75.0
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 1.7e-74 283.1 187 73.8
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.7e-74 283.1 192 72.9
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 2.2e-74 282.7 187 73.3
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.2e-74 282.7 200 71.5
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 2.8e-74 282.3 188 74.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 3.7e-74 282.0 187 75.4
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 3.7e-74 282.0 192 72.9
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 6.3e-74 281.2 203 71.9
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 6.3e-74 281.2 189 74.6
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 6.3e-74 281.2 194 71.6
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 8.3e-74 280.8 195 72.3
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.1e-73 280.4 219 68.5
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.4e-73 280.0 192 70.8
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.8e-73 279.6 193 73.6
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 4.1e-73 278.5 188 73.9
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 9.2e-73 277.3 195 71.3
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 2.0e-72 276.2 188 72.3
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 2.0e-72 276.2 198 74.2
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 7.8e-72 274.2 189 72.5
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 7.8e-72 274.2 189 73.0
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 7.8e-72 274.2 189 73.0
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 7.8e-72 274.2 196 71.9
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.0e-71 273.9 188 73.4
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.3e-71 273.5 187 75.4
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 1.3e-71 273.5 188 73.4
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.3e-71 273.5 189 72.5
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 1.3e-71 273.5 189 71.4
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 1.7e-71 273.1 190 73.7
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.3e-71 272.7 186 72.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.3e-71 272.7 186 72.6
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 2.3e-71 272.7 188 71.8
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.0e-71 271.6 186 72.0
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 5.0e-71 271.6 188 73.9
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 6.6e-71 271.2 188 73.4
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 1.5e-70 270.0 189 72.0
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 1.5e-70 270.0 189 73.0
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 7.3e-70 267.7 189 72.0
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 9.5e-70 267.3 182 74.7
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 9.5e-70 267.3 245 58.4
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 9.5e-70 267.3 245 58.4
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 6.1e-69 264.6 200 70.5
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.4e-68 263.5 150 92.0
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.8e-68 263.1 188 71.3
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 3.1e-68 262.3 192 71.4
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 4.0e-68 261.9 178 71.9
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 8.9e-68 260.8 185 71.4
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.1e-60 237.3 161 73.3
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.1e-60 237.3 159 75.5
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.5e-59 233.4 185 63.2
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 9.8e-59 230.7 189 63.5
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 5.4e-57 224.9 189 61.9
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 1.0e-55 220.7 194 62.4
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 8.6e-55 217.6 166 69.9
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.9e-54 216.5 193 61.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.3e-52 209.5 187 61.0
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 1.9e-49 199.9 139 72.7
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 1.0e-47 194.1 249 50.6
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.2e-45 187.2 109 88.1
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.2e-45 187.2 113 83.2
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 1.4e-44 183.7 121 80.2
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 1.2e-43 180.6 142 64.1
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 5.8e-43 178.3 109 81.7
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 9.9e-43 177.6 141 67.4
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 2.1e-40 169.9 136 64.7
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 1.9e-38 163.3 85 92.9
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.1e-36 157.5 187 48.7
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 2.4e-36 156.4 199 45.2
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 4.2e-33 145.6 102 71.6
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 3.0e-31 139.4 103 65.0
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 3.9e-31 139.0 111 64.0
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 1.3e-29 134.0 144 52.1
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 2.0e-27 126.7 137 55.5
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 1.9e-25 120.2 140 47.9
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 3.0e-23 112.8 113 55.8
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.1e-22 110.9 129 51.2
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.2e-19 100.9 202 35.6
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.5e-17 92.0 81 58.0
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.7e-13 79.3 81 51.9
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.9e-09 67.0 108 39.8
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 2.7e-08 63.2 49 57.1
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 7.9e-08 61.6 52 55.8
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.3e-07 60.1 54 57.4


User provided reference genes

Program Settings