Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.1e-70 268.9 130 100.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.7e-56 222.6 136 78.7
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.1e-55 219.9 137 77.4
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 5.5e-55 217.6 114 88.6
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.6e-54 216.1 114 87.7
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 2.1e-54 215.7 119 81.5
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.2e-52 209.9 113 84.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.2e-52 209.9 122 79.5
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.0e-52 209.1 125 79.2
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.0e-52 209.1 114 86.0
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.0e-52 209.1 125 80.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.6e-52 208.8 129 78.3
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.6e-52 208.8 118 81.4
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.6e-52 208.8 118 82.2
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.4e-52 208.4 113 85.8
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 7.5e-52 207.2 132 75.0
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 7.5e-52 207.2 118 81.4
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 7.5e-52 207.2 125 78.4
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 7.5e-52 207.2 125 78.4
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.3e-51 206.5 119 79.8
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.7e-51 206.1 125 76.0
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.7e-51 204.9 119 78.2
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 3.7e-51 204.9 126 76.2
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 6.3e-51 204.1 125 78.4
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 8.3e-51 203.8 125 76.8
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 1.8e-50 202.6 118 78.8
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-50 202.6 107 86.9
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.8e-50 202.6 107 86.9
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.1e-50 201.8 107 86.9
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 3.1e-50 201.8 118 78.8
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 3.1e-50 201.8 136 70.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 4.1e-50 201.4 109 83.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 4.1e-50 201.4 125 73.6
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.1e-50 201.4 127 74.0
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 5.4e-50 201.1 125 74.4
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 5.4e-50 201.1 134 70.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 5.4e-50 201.1 114 79.8
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.4e-50 201.1 118 77.1
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.4e-50 201.1 118 78.0
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.0e-50 200.7 107 86.0
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 7.0e-50 200.7 125 73.6
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.0e-50 200.7 114 80.7
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.0e-50 200.7 114 80.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 7.0e-50 200.7 108 85.2
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 9.2e-50 200.3 125 75.2
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 9.2e-50 200.3 125 72.8
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.2e-49 199.9 125 72.8
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.2e-49 199.9 113 79.6
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 2.0e-49 199.1 112 78.6
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.7e-49 198.7 127 74.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.7e-49 198.7 122 77.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.5e-49 198.4 126 74.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 4.5e-49 198.0 125 74.4
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 4.5e-49 198.0 124 73.4
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 5.9e-49 197.6 109 83.5
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 7.8e-49 197.2 125 73.6
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 7.8e-49 197.2 125 73.6
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 7.8e-49 197.2 125 73.6
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.0e-48 196.8 126 73.8
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.0e-48 196.8 114 79.8
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.3e-48 196.4 119 78.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.3e-48 195.7 118 77.1
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.3e-48 195.7 125 72.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.3e-48 195.7 125 72.8
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.3e-48 195.7 107 83.2
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.3e-48 195.7 119 77.3
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 2.3e-48 195.7 107 85.0
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.9e-48 195.3 118 77.1
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.9e-48 194.9 118 77.1
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.9e-48 194.9 125 70.4
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 3.9e-48 194.9 109 81.7
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 5.0e-48 194.5 107 85.0
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.0e-48 194.5 137 70.1
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 8.6e-48 193.7 122 75.4
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.6e-48 193.7 125 74.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 8.6e-48 193.7 136 69.9
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.5e-47 193.0 107 83.2
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.5e-47 193.0 125 68.0
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.5e-47 193.0 135 68.9
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.9e-47 192.6 125 70.4
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.9e-47 192.6 124 71.8
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 2.5e-47 192.2 122 74.6
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 4.3e-47 191.4 108 79.6
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.3e-47 191.4 107 82.2
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.6e-47 191.0 118 75.4
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 5.6e-47 191.0 109 81.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 5.6e-47 191.0 116 76.7
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 9.5e-47 190.3 113 78.8
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 9.5e-47 190.3 113 78.8
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 9.5e-47 190.3 118 76.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 9.5e-47 190.3 127 73.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.2e-46 189.9 113 77.9
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.2e-46 189.9 126 73.8
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.6e-46 189.5 108 79.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.6e-46 189.5 107 81.3
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.6e-46 189.5 113 75.2
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.1e-46 189.1 114 74.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.8e-46 188.7 118 75.4
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.6e-46 188.3 141 66.7
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 4.7e-46 188.0 107 78.5
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.0e-45 186.8 115 74.8
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.4e-45 186.4 125 68.0
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.4e-45 186.4 107 78.5
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.4e-45 186.4 127 70.9
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.3e-45 185.7 125 68.0
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.1e-45 185.3 131 67.9
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 4.0e-45 184.9 125 66.4
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.2e-44 183.3 120 70.8
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.0e-44 182.6 125 69.6
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 7.5e-44 180.6 113 73.5
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 9.8e-44 180.3 129 68.2
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 9.8e-44 180.3 136 66.2
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.3e-43 179.9 106 76.4
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.7e-43 179.5 125 66.4
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.4e-42 176.4 114 71.9
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.2e-42 175.3 114 71.1
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.7e-41 172.2 100 78.0
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.6e-41 171.4 128 64.8
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 4.6e-41 171.4 102 79.4
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.0e-40 170.2 99 79.8
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.0e-40 170.2 99 79.8
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.9e-40 168.3 107 69.2
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 6.6e-40 167.5 125 61.6
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.1e-38 162.5 106 66.0
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 6.2e-38 161.0 112 62.5
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.4e-37 159.8 113 63.7
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.4e-37 159.8 107 66.4
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 6.4e-35 151.0 128 61.7
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 8.3e-35 150.6 83 79.5
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 5.4e-34 147.9 107 63.6
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.5e-33 145.2 92 76.1
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 6.4e-27 124.4 63 88.9
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 6.4e-27 124.4 63 88.9
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 9.2e-26 120.6 84 67.9
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 7.8e-25 117.5 63 82.5
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 3.3e-23 112.1 63 79.4
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 2.4e-21 105.9 118 46.6
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 7.1e-18 94.4 67 67.2
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 6.0e-17 91.3 44 93.2
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.9e-15 86.3 58 67.2
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 7.3e-15 84.3 67 61.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.2e-09 67.0 93 38.7
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.3e-07 58.5 54 50.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 7.3e-07 57.8 145 29.0
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 2.1e-06 56.2 81 37.0


User provided reference genes

Program Settings