Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1340 Ceratophyllum demersum HOM05D000104 ORTHO05D004363 0.0e+00 2567.0 1318 100.0
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 0.0e+00 1498.8 1416 59.4
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 0.0e+00 1476.5 1441 58.2
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 0.0e+00 1464.9 1444 57.8
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 0.0e+00 1459.5 1436 57.5
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 0.0e+00 1454.5 1438 57.2
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 0.0e+00 1454.5 1486 56.3
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 0.0e+00 1453.7 1438 56.9
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 0.0e+00 1453.3 1436 57.2
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 0.0e+00 1443.3 1437 57.3
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 0.0e+00 1442.9 1438 57.3
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 0.0e+00 1430.2 1419 56.6
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 0.0e+00 1427.2 1440 56.2
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 0.0e+00 1426.4 1440 56.7
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 0.0e+00 1424.8 1431 56.7
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 0.0e+00 1423.3 1432 57.1
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 0.0e+00 1421.8 1421 56.6
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 0.0e+00 1421.0 1427 56.6
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 0.0e+00 1417.5 1420 56.2
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 0.0e+00 1416.0 1432 56.6
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 0.0e+00 1413.7 1421 56.2
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 0.0e+00 1411.7 1422 57.2
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 0.0e+00 1400.2 1443 56.1
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 0.0e+00 1391.7 1428 56.2
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 0.0e+00 1391.7 1433 56.0
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 0.0e+00 1384.0 1434 55.4
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 0.0e+00 1383.6 1430 55.7
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 0.0e+00 1383.2 1429 55.3
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 0.0e+00 1382.5 1421 55.3
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 0.0e+00 1381.7 1403 55.8
Zm00001eb297280 Zea mays HOM05D000104 ORTHO05D004363 0.0e+00 1375.1 1434 55.4
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 0.0e+00 1374.8 1432 55.1
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 0.0e+00 1373.2 1447 56.0
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 0.0e+00 1373.2 1424 55.3
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 0.0e+00 1371.3 1431 55.3
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 0.0e+00 1369.8 1426 55.7
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 0.0e+00 1368.2 1456 54.5
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 0.0e+00 1365.9 1436 55.3
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 0.0e+00 1364.4 1430 55.3
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 0.0e+00 1364.4 1430 55.2
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 0.0e+00 1364.0 1434 55.2
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 0.0e+00 1362.1 1417 55.0
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 0.0e+00 1361.7 1433 54.5
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 0.0e+00 1360.9 1430 55.0
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 0.0e+00 1359.0 1402 55.1
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 0.0e+00 1356.7 1432 55.0
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 0.0e+00 1356.7 1431 54.9
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 0.0e+00 1356.3 1434 55.0
GSVIVG01019359001 Vitis vinifera HOM05D000104 ORTHO05D004363 0.0e+00 1355.9 1387 55.6
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 0.0e+00 1353.6 1435 55.1
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 0.0e+00 1351.7 1444 54.5
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 0.0e+00 1351.3 1431 54.5
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 0.0e+00 1350.1 1443 54.5
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 0.0e+00 1349.0 1430 55.0
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 0.0e+00 1343.6 1437 54.5
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 0.0e+00 1340.9 1438 53.5
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 0.0e+00 1339.3 1438 54.8
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 0.0e+00 1338.6 1456 53.6
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 0.0e+00 1338.6 1439 54.1
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 0.0e+00 1337.4 1438 54.5
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 0.0e+00 1335.5 1403 54.6
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 0.0e+00 1335.1 1451 53.5
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 0.0e+00 1329.3 1455 53.7
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 0.0e+00 1328.2 1439 54.1
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 0.0e+00 1327.8 1437 53.7
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 0.0e+00 1325.8 1440 53.3
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 0.0e+00 1311.2 1487 52.1
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 0.0e+00 1289.6 1441 52.9
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 0.0e+00 1282.7 1429 52.5
Hund23685 Selenicereus undatus HOM05D000104 ORTHO05D004363 0.0e+00 1274.2 1426 52.6
CiPaw.09G169600 Carya illinoinensis HOM05D000104 ORTHO05D004363 0.0e+00 1273.1 1336 55.0
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 0.0e+00 1265.0 1516 50.7
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 0.0e+00 1255.0 1398 53.1
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 0.0e+00 1251.5 1415 51.7
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 0.0e+00 1238.8 1416 51.0
Ah.14g089210 Amaranthus hybridus HOM05D000104 ORTHO05D004363 0.0e+00 1236.9 1420 52.2
SEGI_24237 Sequoiadendron giganteum HOM05D000104 ORTHO05D004363 0.0e+00 1212.2 1436 50.3
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 0.0e+00 1198.0 1367 51.9
Oeu007492.1 Olea europaea HOM05D000104 ORTHO05D004363 0.0e+00 1191.4 1344 51.8
Haze_20464 Corylus avellana HOM05D000104 ORTHO05D004363 0.0e+00 1104.4 1353 49.4
Mapoly0038s0059 Marchantia polymorpha HOM05D000104 ORTHO05D004363 0.0e+00 1087.4 1467 46.1
Pp3c3_11220 Physcomitrium patens HOM05D000104 ORTHO05D004363 8.1e-311 1070.8 1529 45.5
AagrBONN_evm.TU.Sc2ySwM_228.1549 Anthoceros agrestis HOM05D000104 ORTHO05D004363 5.2e-310 1068.1 1413 46.1
Dinv09442 Davidia involucrata HOM05D000104 ORTHO05D004363 1.7e-305 1053.1 936 62.0
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 1.1e-302 1043.9 1408 46.7
Nitab4.5_0002482g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 3.4e-285 985.7 909 59.7
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 2.3e-273 946.4 1245 47.1
SMO223G0022 Selaginella moellendorffii HOM05D000104 ORTHO05D004363 5.8e-269 931.8 1386 42.9
FAN11G0644 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.1e-266 923.3 881 58.1
MD03G1000900 Malus domestica HOM05D000104 ORTHO05D004363 4.7e-226 789.3 789 57.0
vmacro00212 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 2.9e-220 770.0 806 54.7
Nitab4.5_0001131g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 1.9e-219 767.3 768 56.6
CsaV3_4G017750 Cucumis sativus L. HOM05D000104 ORTHO05D004363 6.3e-215 752.3 780 54.9
Solyc08g074500.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 3.0e-196 690.3 627 60.0
CsaV3_3G021060 Cucumis sativus L. HOM05D000104 ORTHO05D004363 6.6e-196 689.1 709 54.9
CBR_g57043 Chara braunii HOM05D000104 ORTHO05D004363 2.5e-195 687.2 1868 30.7
CARHR164200 Cardamine hirsuta HOM05D000104 ORTHO05D004363 5.6e-195 686.0 745 54.2
CARHR164210 Cardamine hirsuta HOM05D000104 ORTHO05D004363 5.6e-195 686.0 651 57.6
Peaxi162Scf00213g01724 Petunia axillaris HOM05D000104 ORTHO05D004363 5.2e-177 626.3 533 62.9
Solyc08g074520.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 1.9e-174 617.8 661 54.5
vmacro00211 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 3.5e-165 587.0 729 49.2
Peaxi162Scf00213g01732 Petunia axillaris HOM05D000104 ORTHO05D004363 1.6e-154 551.6 647 51.8
BcaC02g09076 Brassica carinata HOM05D000104 ORTHO05D004363 5.1e-148 530.0 643 50.9
CsaV3_3G021040 Cucumis sativus L. HOM05D000104 ORTHO05D004363 4.3e-147 526.9 598 51.8
CsaV3_4G017740 Cucumis sativus L. HOM05D000104 ORTHO05D004363 4.3e-147 526.9 598 51.8
Cpa.g.sc73.36 Carica papaya HOM05D000104 ORTHO05D004363 5.7e-131 473.4 483 54.0
SHI06790 Sapria himalayana HOM05D000190 ORTHO05D004363 7.4e-131 473.0 741 44.4
Os02g0161300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004363 1.1e-121 442.6 457 52.1
ATR0559G230 Amborella trichopoda HOM05D000104 ORTHO05D004363 7.0e-121 439.9 554 47.8
Cpa.g.sc73.37 Carica papaya HOM05D000104 ORTHO05D004363 7.0e-121 439.9 493 52.3
CAN.G195.24 Capsicum annuum HOM05D000104 ORTHO05D004363 1.2e-115 422.5 496 50.4
Oeu026040.2 Olea europaea HOM05D000104 ORTHO05D004363 2.2e-114 418.3 1070 33.9
MCO02G056 Micromonas commoda HOM05D000104 ORTHO05D004363 3.6e-109 401.0 1407 27.3
Dinv09441 Davidia involucrata HOM05D000104 ORTHO05D004363 2.3e-108 398.3 353 61.5
BolC4t25391H Brassica oleracea HOM05D000104 ORTHO05D004363 3.0e-108 397.9 466 51.9
Cre16.g687301 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004363 1.2e-91 342.8 1362 26.7
MD03G1000600 Malus domestica HOM05D000104 ORTHO05D004363 9.8e-91 339.7 323 58.5
unitig_93.g30711 Utricularia gibba HOM05D000104 ORTHO05D004363 1.7e-82 312.4 424 47.6
unitig_93.g30710 Utricularia gibba HOM05D000104 ORTHO05D004363 4.9e-82 310.8 461 43.6
AagrBONN_evm.TU.Sc2ySwM_228.4035 Anthoceros agrestis HOM05D000104 ORTHO05D004363 3.2e-81 308.1 387 47.0
arahy.Tifrunner.gnm1.ann1.YM0GIL Arachis hypogaea HOM05D000104 ORTHO05D004363 6.2e-77 293.9 280 60.0
Nitab4.5_0023622g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 6.2e-77 293.9 331 51.7
C04p38160 Brassica napus HOM05D000104 ORTHO05D004363 4.9e-74 284.3 391 46.8
PRCOL_00001942 Prasinoderma coloniale HOM05D000104 ORTHO05D004363 8.7e-55 220.3 1415 24.3
FAN25G2034 Fragaria x ananassa HOM05D000104 ORTHO05D004363 6.4e-50 204.1 132 78.8
Rhsim03G0207500 Rhododendron simsii HOM05D000104 ORTHO05D004363 4.5e-43 181.4 468 32.5
C04p38150 Brassica napus HOM05D000104 ORTHO05D004363 4.9e-42 177.9 150 65.3
Hma1.2p1_0268F.1_g107680 Hydrangea macrophylla HOM05D000104 ORTHO05D004363 1.8e-39 169.5 141 62.4
SGA_v2.0_scaffold447G51747 Striga asiatica HOM05D000104 ORTHO05D004363 3.3e-38 165.2 141 63.1
Nitab4.5_0002482g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 9.6e-38 163.7 143 61.5
CAN.G195.25 Capsicum annuum HOM05D000104 ORTHO05D004363 4.5e-35 154.8 139 61.9
C04p38170 Brassica napus HOM05D000104 ORTHO05D004363 4.9e-34 151.4 194 45.9
Nitab4.5_0011472g0010 Nicotiana tabacum HOM05D022199 ORTHO05D004363 1.1e-33 150.2 138 58.0
PGSC0003DMG400029599 Solanum tuberosum HOM05D000104 ORTHO05D004363 1.2e-32 146.7 94 78.7
CAN.G195.21 Capsicum annuum HOM05D000104 ORTHO05D004363 1.0e-31 143.7 90 77.8
unitig_92.g28134 Utricularia gibba HOM05D000104 ORTHO05D004363 1.8e-31 142.9 94 76.6
SHI06788 Sapria himalayana HOM05D000104 ORTHO05D004363 6.7e-31 141.0 296 35.5
ATR0559G182 Amborella trichopoda HOM05D000104 ORTHO05D004363 1.4e-28 133.3 90 76.7
CAN.G275.6 Capsicum annuum HOM05D000104 ORTHO05D031620 1.1e-25 123.6 89 69.7
CsaV3_3G021050 Cucumis sativus L. HOM05D000104 ORTHO05D004363 5.5e-25 121.3 94 69.1
Nitab4.5_0001131g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 5.5e-25 121.3 110 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4068 Anthoceros agrestis HOM05D000104 ORTHO05D004363 2.2e-21 109.4 235 32.8
HanXRQChr16g0510321 Helianthus annuus HOM05D000104 ORTHO05D004363 3.7e-21 108.6 79 73.4
arahy.Tifrunner.gnm1.ann1.9A92AA Arachis hypogaea HOM05D000750 ORTHO05D031620 1.8e-20 106.3 71 77.5
TAR362G0053 Trochodendron aralioides HOM05D000104 ORTHO05D004363 9.1e-20 104.0 60 83.3
Solyc08g074510.1 Solanum lycopersicum HOM05D000104 ORTHO05D004363 2.5e-17 95.9 107 55.1
Peaxi162Scf00213g01731 Petunia axillaris HOM05D000104 ORTHO05D004363 4.2e-17 95.1 189 40.7
Hma1.2p1_0268F.1_g107670 Hydrangea macrophylla HOM05D000104 ORTHO05D004363 1.6e-16 93.2 88 59.1
CAN.G195.23 Capsicum annuum HOM05D000104 ORTHO05D004363 2.1e-16 92.8 106 52.8
Lsat_1_v5_gn_7_28860 Lactuca sativa HOM05D000499 ORTHO05D006980 3.6e-16 92.0 70 65.7
Haze_20467 Corylus avellana HOM05D000104 ORTHO05D004363 4.7e-16 91.7 95 57.9
ATR0559G076 Amborella trichopoda HOM05D000104 ORTHO05D004363 8.8e-15 87.4 108 46.3
AagrBONN_evm.TU.Sc2ySwM_228.4034 Anthoceros agrestis HOM05D000104 ORTHO05D004363 3.3e-14 85.5 52 73.1
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 9.7e-14 84.0 43 93.0
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 9.1e-12 77.4 44 81.8
EL10Ac6g14346 Beta vulgaris HOM05D000104 ORTHO05D004363 2.0e-11 76.3 70 65.7
BraA04t16249Z Brassica rapa HOM05D000104 ORTHO05D004363 6.5e-10 71.2 45 80.0
CAN.G519.11 Capsicum annuum HOM05D000059 ORTHO05D115272 1.1e-09 70.5 58 63.8
QL10p058187 Quercus lobata HOM05D000104 ORTHO05D004363 1.5e-09 70.1 41 78.0
QL10p058190 Quercus lobata HOM05D000104 ORTHO05D004363 5.5e-09 68.2 78 44.9


User provided reference genes

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