Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 2.9e-81 305.1 142 100.0
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 4.1e-19 98.6 92 48.9
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.2e-18 97.1 92 45.7
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 7.7e-18 94.4 102 43.1
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.0e-17 94.0 98 42.9
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.0e-17 94.0 112 43.8
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.3e-17 93.6 97 47.4
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.7e-17 93.2 89 43.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.9e-17 92.4 101 42.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.9e-17 92.4 101 38.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 6.5e-17 91.3 92 44.6
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 6.5e-17 91.3 102 41.2
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 6.5e-17 91.3 102 41.2
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 1.5e-16 90.1 110 39.1
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.9e-16 89.7 91 44.0
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.5e-16 89.4 91 44.0
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.3e-16 89.0 87 44.8
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 4.2e-16 88.6 91 46.2
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 4.2e-16 88.6 85 44.7
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 4.2e-16 88.6 102 40.2
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 4.2e-16 88.6 102 40.2
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 5.5e-16 88.2 92 41.3
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.2e-15 87.0 90 41.1
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.1e-15 86.3 91 42.9
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.7e-15 85.1 100 39.0
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 4.7e-15 85.1 90 40.0
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 4.7e-15 85.1 92 43.5
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 8.0e-15 84.3 101 39.6
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 1.0e-14 84.0 92 43.5
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.0e-14 84.0 93 44.1
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.0e-14 84.0 88 39.8
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 1.0e-14 84.0 93 40.9
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.4e-14 83.6 89 49.4
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.3e-14 82.8 90 38.9
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.3e-14 82.8 96 36.5
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.0e-14 82.4 89 40.4
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 3.0e-14 82.4 96 39.6
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.0e-14 82.0 101 40.6
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.0e-14 82.0 96 42.7
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 4.0e-14 82.0 93 37.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 4.0e-14 82.0 70 47.1
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 8.9e-14 80.9 99 42.4
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 8.9e-14 80.9 91 36.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 8.9e-14 80.9 90 41.1
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.2e-13 80.5 84 39.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.5e-13 80.1 85 43.5
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.0e-13 79.7 92 38.0
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 2.0e-13 79.7 92 35.9
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.0e-13 79.7 88 36.4
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 2.6e-13 79.3 84 42.9
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.6e-13 79.3 105 34.3
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 3.4e-13 79.0 92 35.9
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 4.4e-13 78.6 85 38.8
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 4.4e-13 78.6 85 37.6
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 7.5e-13 77.8 85 40.0
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.3e-12 77.0 92 38.0
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.3e-12 77.0 84 44.0
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.7e-12 76.6 103 39.8
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 1.7e-12 76.6 91 44.0
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 1.7e-12 76.6 85 37.6
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.7e-12 76.6 84 38.1
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.2e-12 76.3 84 38.1
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 2.2e-12 76.3 118 31.4
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 2.8e-12 75.9 84 40.5
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.9e-12 75.1 95 40.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 4.9e-12 75.1 84 39.3
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 6.3e-12 74.7 103 32.0
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 6.3e-12 74.7 87 37.9
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 8.3e-12 74.3 92 42.4
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 8.3e-12 74.3 92 42.4
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.1e-11 73.9 85 43.5
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.1e-11 73.9 75 42.7
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.1e-11 73.9 81 38.3
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.4e-11 73.6 47 57.4
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.4e-11 73.6 47 57.4
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.4e-11 73.6 102 32.4
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.4e-11 72.8 91 39.6
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 4.1e-11 72.0 47 57.4
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 4.1e-11 72.0 78 37.2
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 7.0e-11 71.2 47 57.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.0e-11 71.2 49 57.1
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 9.2e-11 70.9 90 37.8
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.2e-10 70.5 47 57.4
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.2e-10 70.5 47 57.4
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.2e-10 70.5 47 55.3
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.2e-10 70.5 47 55.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.7e-10 69.3 47 57.4
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 4.5e-10 68.6 53 49.1
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 5.9e-10 68.2 92 34.8
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 5.9e-10 68.2 54 50.0
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.0e-09 67.4 76 39.5
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.0e-09 67.4 49 55.1
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 1.3e-09 67.0 55 47.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 1.7e-09 66.6 100 35.0
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.9e-09 65.9 67 37.3
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.9e-09 65.9 67 37.3
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 2.9e-09 65.9 51 51.0
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 2.9e-09 65.9 96 35.4
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 2.9e-09 65.9 71 45.1
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 5.0e-09 65.1 51 47.1
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 6.6e-09 64.7 92 38.0
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 8.6e-09 64.3 88 35.2
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 8.6e-09 64.3 100 34.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 8.6e-09 64.3 100 34.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 8.6e-09 64.3 67 41.8
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 1.5e-08 63.5 100 34.0
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.5e-08 63.5 47 55.3
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.9e-08 63.2 50 52.0
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 1.9e-08 63.2 94 36.2
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.5e-08 62.8 44 54.5
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 3.3e-08 62.4 96 33.3
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.3e-08 62.4 97 35.1
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 5.6e-08 61.6 100 34.0
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 5.6e-08 61.6 94 40.4
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 7.3e-08 61.2 87 34.5
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 9.5e-08 60.8 50 46.0
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.2e-07 60.5 85 35.3
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.6e-07 60.1 88 33.0
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 1.6e-07 60.1 89 34.8
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 2.1e-07 59.7 89 36.0
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 2.8e-07 59.3 42 57.1
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 6.1e-07 58.2 85 34.1
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 6.1e-07 58.2 85 34.1
Hma1.2p1_0211F.1_g089820 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.1e-07 58.2 46 52.2
Hma1.2p1_2779F.1_g328290 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.1e-07 58.2 46 52.2
THA.LOC104806974 Tarenaya hassleriana HOM05D007462 ORTHO05D002086 6.1e-07 58.2 105 35.2
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 8.0e-07 57.8 69 39.1
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 8.0e-07 57.8 87 35.6
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 1.0e-06 57.4 92 34.8
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 1.4e-06 57.0 124 25.8
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 2.3e-06 56.2 92 34.8
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 2.3e-06 56.2 89 33.7
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 2.3e-06 56.2 54 40.7
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 2.3e-06 56.2 54 40.7
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.3e-06 56.2 84 32.1
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.3e-06 56.2 84 32.1
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 3.0e-06 55.8 89 33.7
Lj5P132T39 Lonicera japonica HOM05D008126 ORTHO05D000309 3.0e-06 55.8 69 42.0
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 3.0e-06 55.8 43 46.5
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 4.0e-06 55.5 89 34.8
Hma1.2p1_0071F.1_g038200 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.0e-06 55.5 46 50.0
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 4.0e-06 55.5 61 39.3
BcaB04g20307 Brassica carinata HOM05D007462 ORTHO05D002086 5.2e-06 55.1 70 45.7
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 5.2e-06 55.1 86 33.7
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 5.2e-06 55.1 79 32.9
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 6.8e-06 54.7 85 34.1
AUR62010327 Chenopodium quinoa HOM05D002655 ORTHO05D002558 6.8e-06 54.7 92 35.9
MBI11_g02483_MAGBIO Magnolia biondii HOM05D056835 ORTHO05D004072 6.8e-06 54.7 69 42.0
Hma1.2p1_0512F.1_g169330 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.9e-06 54.3 38 55.3


User provided reference genes

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