Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 5.0e-193 677.6 335 100.0
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.1e-178 629.0 323 96.6
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.9e-137 491.9 337 73.3
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.5e-136 490.0 311 77.8
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.5e-133 479.9 286 80.1
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 2.9e-132 475.7 305 77.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 3.8e-132 475.3 308 76.0
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.4e-129 466.8 286 79.7
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.1e-126 457.2 334 70.7
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 2.4e-126 456.1 305 73.8
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 4.1e-126 455.3 304 73.4
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 1.5e-125 453.4 302 73.8
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.0e-125 453.0 286 75.9
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 2.6e-125 452.6 286 76.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 5.9e-125 451.4 284 76.1
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.7e-125 451.1 286 75.5
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.7e-124 449.9 302 73.2
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 3.8e-124 448.7 284 76.4
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.9e-123 446.4 338 66.6
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 5.5e-123 444.9 312 70.2
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 7.2e-123 444.5 286 75.5
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 7.2e-123 444.5 286 75.9
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 7.2e-123 444.5 300 72.3
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 7.2e-123 444.5 329 69.6
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.2e-122 443.7 302 72.8
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 2.7e-122 442.6 287 75.6
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 2.7e-122 442.6 300 72.0
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.0e-121 440.7 320 68.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.4e-121 440.3 331 68.3
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.8e-121 439.9 324 70.1
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.1e-120 437.2 334 66.8
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.0e-120 436.4 326 66.3
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 2.0e-120 436.4 300 72.3
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 2.6e-120 436.0 284 75.0
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 2.6e-120 436.0 284 75.0
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 5.7e-120 434.9 314 68.5
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 7.4e-120 434.5 324 67.3
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.3e-119 433.7 284 74.6
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.3e-119 433.7 284 74.6
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 3.7e-119 432.2 333 65.5
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.1e-118 429.1 290 73.8
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 3.1e-118 429.1 329 64.7
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 2.9e-116 422.5 283 71.0
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 2.9e-116 422.5 342 64.6
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 5.0e-116 421.8 319 66.5
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.5e-115 419.5 308 69.8
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.2e-115 419.1 287 70.7
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 4.2e-115 418.7 301 70.1
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 4.2e-115 418.7 267 74.5
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.6e-114 416.8 304 67.4
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.1e-114 416.4 286 71.7
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.7e-114 416.0 287 72.5
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 4.7e-114 415.2 329 62.6
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 8.0e-114 414.5 329 64.4
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.0e-113 414.1 331 64.0
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.0e-113 412.1 286 71.3
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 5.2e-113 411.8 293 70.0
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 5.2e-113 411.8 330 64.8
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 8.8e-113 411.0 330 65.5
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 8.8e-113 411.0 287 71.1
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.5e-112 410.2 317 66.9
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 5.7e-112 408.3 286 70.6
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 7.5e-112 407.9 305 67.2
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 9.7e-112 407.5 288 72.2
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.3e-111 407.1 286 71.0
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 2.2e-111 406.4 334 64.7
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 6.3e-111 404.8 287 69.7
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 8.2e-111 404.4 254 76.4
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.1e-110 404.1 258 76.7
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 1.4e-110 403.7 286 70.3
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.1e-110 401.0 258 75.6
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.2e-109 400.6 225 84.0
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.6e-109 400.2 286 69.9
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 4.5e-109 398.7 342 61.1
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 2.2e-108 396.4 232 78.9
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 6.5e-108 394.8 225 83.1
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 6.5e-108 394.8 223 83.4
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.5e-107 393.7 301 66.8
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.5e-107 393.7 222 83.3
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 9.4e-107 391.0 227 81.9
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 6.1e-106 388.3 293 68.6
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.2e-104 384.0 311 64.3
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 7.5e-104 381.3 288 67.7
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.0e-97 360.9 347 57.9
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.3e-97 359.8 299 65.6
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 6.8e-97 358.2 257 67.3
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.1e-94 349.4 206 80.6
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 7.0e-94 348.2 249 68.7
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 2.7e-93 346.3 234 74.4
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 2.9e-92 342.8 307 58.6
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 5.0e-92 342.0 243 68.3
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.6e-92 341.7 292 59.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.1e-91 340.9 222 75.2
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.6e-90 337.0 366 52.5
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.6e-88 329.7 242 67.4
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.3e-84 317.4 246 66.3
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 3.1e-81 306.2 444 42.8
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 5.2e-81 305.4 225 64.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 6.0e-77 292.0 295 51.9
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 8.6e-76 288.1 269 58.0
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 5.6e-75 285.4 329 47.7
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 2.9e-71 273.1 167 77.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.2e-66 257.7 224 61.2
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.9e-64 248.1 224 56.7
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.9e-62 243.8 224 58.0
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 3.0e-60 236.5 263 51.7
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.5e-59 233.4 253 55.7
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.6e-58 230.7 119 84.9
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.8e-58 229.9 205 54.1
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-57 227.6 217 56.7
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 6.0e-53 212.2 143 71.3
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.2e-48 198.0 215 53.5
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.8e-34 150.2 96 74.0
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.2e-32 144.8 109 69.7
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.2e-31 140.6 175 39.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.3e-27 126.7 111 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.3e-26 124.8 145 50.3
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.4e-25 121.3 62 88.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.1e-19 101.7 104 54.8
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.6e-11 73.9 43 83.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-09 67.8 76 50.0
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-09 67.8 76 50.0
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 4.5e-08 63.2 149 34.9


User provided reference genes

Program Settings