Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.3e-207 725.3 371 100.0
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.9e-204 715.7 370 98.4
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.0e-162 577.0 326 88.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.3e-162 575.9 373 81.0
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 3.9e-162 575.1 348 83.6
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.6e-160 569.7 349 84.0
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.6e-160 569.7 349 84.0
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 5.5e-156 554.7 340 83.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 2.1e-155 552.7 350 80.3
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 1.3e-154 550.1 353 80.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.8e-154 549.7 351 79.8
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.1e-153 547.0 375 76.5
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.5e-153 546.6 375 76.3
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 5.7e-153 544.7 352 79.8
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 8.2e-152 540.8 361 77.3
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 6.9e-151 537.7 349 78.8
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.4e-150 535.4 354 78.0
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.0e-149 533.9 373 75.3
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.3e-149 533.5 361 78.1
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 3.8e-149 531.9 355 78.3
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.8e-149 531.9 366 76.2
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 5.0e-149 531.6 355 78.3
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.9e-148 529.6 358 77.7
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.9e-148 529.6 379 74.4
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.9e-148 529.6 349 76.8
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.2e-148 528.9 354 77.1
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 4.2e-148 528.5 354 76.3
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.2e-148 528.5 354 77.1
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 9.3e-148 527.3 351 78.6
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.6e-147 526.6 349 77.7
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.7e-147 525.8 354 77.7
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 2.7e-147 525.8 355 77.7
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 4.6e-147 525.0 355 77.5
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 4.6e-147 525.0 351 76.9
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 6.1e-147 524.6 355 77.2
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.0e-146 523.9 327 81.7
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.3e-146 523.5 348 78.4
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.3e-146 523.5 370 73.2
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.3e-146 522.7 371 73.0
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.3e-146 522.7 349 77.1
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 3.0e-146 522.3 355 77.5
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 3.0e-146 522.3 360 74.2
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 8.7e-146 520.8 349 76.2
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.5e-145 520.0 362 76.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.5e-145 520.0 368 74.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.5e-145 519.2 349 75.4
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 3.3e-145 518.8 360 73.9
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.3e-145 518.8 365 75.3
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 4.3e-145 518.5 352 76.4
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 4.3e-145 518.5 356 76.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 2.8e-144 515.8 360 73.3
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 4.8e-144 515.0 360 73.3
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 4.8e-144 515.0 349 73.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 6.3e-144 514.6 353 76.5
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.3e-144 514.6 342 77.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 6.3e-144 514.6 335 77.3
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 8.2e-144 514.2 354 76.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 8.2e-144 514.2 324 79.0
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.1e-143 513.8 349 75.9
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.1e-143 513.8 324 80.6
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.4e-143 513.5 372 73.1
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.4e-143 513.5 349 74.5
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.8e-143 513.1 366 74.0
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.8e-143 513.1 345 77.4
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.8e-143 513.1 372 72.8
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.1e-143 512.3 341 77.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.1e-143 512.3 352 75.3
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 4.1e-143 511.9 340 78.2
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 9.0e-143 510.8 321 81.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 9.0e-143 510.8 352 77.3
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.2e-142 510.4 345 76.8
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 2.0e-142 509.6 356 74.7
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 2.0e-142 509.6 371 71.7
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-142 509.2 355 74.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.6e-142 509.2 355 74.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.6e-142 509.2 355 72.7
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 3.4e-142 508.8 353 75.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.4e-142 508.8 377 71.9
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 4.5e-142 508.4 352 75.3
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 4.5e-142 508.4 349 75.1
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 5.9e-142 508.1 341 76.0
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 5.9e-142 508.1 347 76.4
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 5.9e-142 508.1 340 77.6
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 7.7e-142 507.7 357 73.7
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 7.7e-142 507.7 349 75.1
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 7.7e-142 507.7 353 75.6
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.3e-141 506.9 370 71.1
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 1.7e-141 506.5 359 73.5
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.2e-141 506.1 365 73.2
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.2e-141 506.1 341 76.2
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.2e-141 506.1 371 72.0
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 3.8e-141 505.4 352 73.9
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 5.0e-141 505.0 351 74.6
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 5.0e-141 505.0 369 72.1
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 6.5e-141 504.6 348 73.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 6.5e-141 504.6 360 73.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 6.5e-141 504.6 359 73.3
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 6.5e-141 504.6 360 73.9
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 8.5e-141 504.2 350 75.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.1e-140 503.8 370 71.9
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.4e-140 503.4 353 75.1
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-140 503.4 353 75.1
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.4e-140 503.4 341 76.5
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.2e-140 501.9 352 73.9
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 5.5e-140 501.5 357 72.8
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.5e-140 501.5 374 70.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 7.2e-140 501.1 357 73.1
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.1e-139 499.6 341 74.8
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 2.7e-139 499.2 362 71.3
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.6e-139 498.8 367 73.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 7.9e-139 497.7 351 74.1
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.9e-139 497.7 367 70.6
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.4e-138 496.9 351 73.8
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-138 496.9 349 75.1
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 3.0e-138 495.7 351 73.8
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 3.0e-138 495.7 351 73.8
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.9e-138 495.4 351 73.8
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 5.1e-138 495.0 351 74.1
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 5.1e-138 495.0 351 73.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 5.1e-138 495.0 351 73.5
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 5.1e-138 495.0 351 74.1
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 8.8e-138 494.2 316 79.4
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 8.8e-138 494.2 352 72.2
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.1e-137 493.8 339 75.8
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 2.5e-137 492.7 299 80.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-137 491.9 329 79.9
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 5.7e-137 491.5 299 81.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.3e-136 490.3 359 70.8
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.2e-136 489.6 390 65.9
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-135 486.9 351 73.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-135 486.9 351 73.8
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 9.1e-135 484.2 440 61.6
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-134 483.8 300 81.3
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 4.5e-134 481.9 322 74.5
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.7e-134 481.1 359 68.5
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.7e-133 479.9 299 79.9
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.0e-133 478.4 325 74.8
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 4.2e-132 475.3 354 70.3
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 9.4e-132 474.2 346 68.8
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 9.4e-132 474.2 350 71.4
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.2e-131 473.8 298 78.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.6e-131 473.4 285 82.1
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.3e-130 469.5 285 82.5
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 5.1e-130 468.4 331 73.1
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 4.8e-128 461.8 359 68.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 8.5e-125 451.1 332 71.4
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.5e-124 449.5 350 68.9
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.9e-116 423.3 313 68.7
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.4e-111 406.4 332 63.3
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.7e-102 376.3 290 64.1
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.9e-101 372.9 256 75.4
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 8.6e-101 371.3 250 76.0
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.6e-99 367.1 261 74.3
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.7e-96 357.1 252 73.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 3.3e-76 289.7 208 76.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 2.0e-73 280.4 271 60.5
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 6.4e-72 275.4 306 50.7
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 4.2e-63 246.1 189 69.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 9.6e-60 235.0 376 42.8
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.2e-46 191.4 112 80.4
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 6.2e-43 179.1 113 77.0
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 3.9e-37 159.8 188 53.2
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.9e-37 159.8 283 35.7
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 4.3e-36 156.4 169 56.8
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 4.3e-36 156.4 169 56.8
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 4.6e-30 136.3 101 66.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.0e-29 133.7 99 67.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.0e-29 133.7 98 67.3
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.0e-29 133.7 99 67.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.9e-28 131.0 99 66.7
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.6e-27 127.9 103 63.1
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 5.3e-26 122.9 104 58.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 7.7e-25 119.0 103 58.3
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.4e-18 98.2 64 73.4
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.9e-15 87.8 73 69.9
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.3e-13 80.9 49 79.6
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 5.2e-13 79.7 64 70.3


User provided reference genes

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