Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 7.9e-135 483.8 247 100.0
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 3.0e-102 375.6 251 76.9
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 3.9e-102 375.2 272 72.8
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 5.2e-102 374.8 272 72.4
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 1.5e-101 373.2 271 73.4
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 9.7e-101 370.5 272 75.7
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 4.8e-100 368.2 272 72.4
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 8.2e-100 367.5 248 75.8
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 2.6e-98 362.5 272 69.5
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 4.5e-98 361.7 279 70.6
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 4.5e-98 361.7 272 71.0
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 2.2e-97 359.4 272 69.9
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 2.9e-97 359.0 272 68.0
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 3.8e-97 358.6 251 74.9
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 3.8e-97 358.6 272 68.4
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 2.5e-96 355.9 250 73.6
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 3.2e-96 355.5 272 68.0
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 9.4e-96 354.0 269 71.0
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 1.6e-95 353.2 254 70.1
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 2.1e-95 352.8 273 68.5
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 4.7e-95 351.7 272 68.0
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 1.4e-94 350.1 268 69.8
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 1.4e-94 350.1 254 71.3
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 3.0e-94 349.0 272 68.0
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 4.0e-94 348.6 250 71.2
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 5.2e-94 348.2 252 70.6
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 1.2e-93 347.1 271 67.9
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 1.2e-93 347.1 250 71.2
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 5.7e-93 344.7 250 70.0
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 5.7e-93 344.7 241 73.0
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 5.7e-93 344.7 271 68.6
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 9.8e-93 344.0 272 66.5
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.3e-92 343.6 227 76.2
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.2e-92 342.8 239 73.6
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 2.2e-92 342.8 239 73.6
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 2.2e-92 342.8 239 73.6
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 2.2e-92 342.8 249 69.5
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 2.2e-92 342.8 250 71.2
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 1.4e-91 340.1 272 66.5
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.4e-91 340.1 231 74.0
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 1.4e-91 340.1 231 74.5
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 1.8e-91 339.7 231 73.6
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 3.1e-91 339.0 248 69.4
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 7.0e-91 337.8 232 73.3
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 1.2e-90 337.0 227 75.3
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 2.0e-90 336.3 232 73.7
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 2.0e-90 336.3 230 73.5
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 2.7e-90 335.9 275 66.9
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 3.5e-90 335.5 230 73.5
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.9e-90 334.7 272 65.4
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 5.9e-90 334.7 232 73.7
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 5.9e-90 334.7 243 69.5
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 1.0e-89 334.0 231 73.6
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 1.0e-89 334.0 231 73.6
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 1.0e-89 334.0 272 65.4
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.0e-89 334.0 272 65.4
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 1.0e-89 334.0 275 65.5
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 1.0e-89 334.0 230 73.0
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 2.2e-89 332.8 259 69.5
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 2.2e-89 332.8 231 73.6
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 2.2e-89 332.8 231 73.2
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 2.2e-89 332.8 273 65.2
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 2.2e-89 332.8 234 73.1
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 2.9e-89 332.4 231 73.2
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 3.8e-89 332.0 243 70.8
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.0e-89 331.6 272 64.7
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.5e-88 329.3 271 64.9
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 2.5e-88 329.3 228 72.8
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 2.5e-88 329.3 277 66.4
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 2.5e-88 329.3 231 72.7
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 4.2e-88 328.6 244 69.7
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 9.4e-88 327.4 230 71.7
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 1.2e-87 327.0 277 66.1
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 1.6e-87 326.6 230 71.3
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 2.1e-87 326.2 233 70.8
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 2.1e-87 326.2 232 70.7
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 2.1e-87 326.2 242 68.2
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 8.0e-87 324.3 232 69.8
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 1.8e-86 323.2 277 63.2
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 3.0e-86 322.4 230 71.3
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 3.0e-86 322.4 268 63.8
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 5.2e-86 321.6 228 72.4
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 6.8e-86 321.2 289 61.9
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 8.8e-86 320.9 228 68.9
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 8.8e-86 320.9 271 65.3
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 8.8e-86 320.9 272 63.2
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 8.8e-86 320.9 244 66.8
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 1.2e-85 320.5 272 64.0
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 1.2e-85 320.5 271 64.9
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 1.5e-85 320.1 226 70.4
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 5.7e-85 318.2 240 68.8
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 2.2e-84 316.2 268 63.8
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.8e-84 315.8 236 69.1
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 4.9e-84 315.1 235 69.4
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 6.3e-84 314.7 228 68.9
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 8.3e-84 314.3 228 69.3
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 1.1e-83 313.9 273 64.5
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 1.8e-83 313.2 242 68.2
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 2.0e-82 309.7 236 68.2
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 2.0e-82 309.7 236 68.2
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 2.0e-82 309.7 236 68.2
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 2.0e-82 309.7 236 68.2
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 2.7e-82 309.3 236 67.8
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 2.7e-82 309.3 246 66.7
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 4.5e-82 308.5 236 67.8
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 4.5e-82 308.5 232 68.5
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 5.9e-82 308.1 236 67.8
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 7.7e-82 307.8 235 67.7
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 7.7e-82 307.8 236 67.4
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 1.0e-81 307.4 236 69.1
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 1.3e-81 307.0 227 67.8
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 1.7e-81 306.6 227 67.4
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 1.7e-81 306.6 228 68.4
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 2.9e-81 305.8 239 67.4
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 2.9e-81 305.8 239 67.4
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 8.6e-81 304.3 239 65.3
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 1.1e-80 303.9 228 67.5
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 1.1e-80 303.9 228 67.5
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 1.9e-80 303.1 236 65.3
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 3.3e-80 302.4 239 66.9
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 4.2e-80 302.0 227 67.8
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 5.5e-80 301.6 226 67.7
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 9.5e-80 300.8 227 67.4
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 1.2e-79 300.4 227 67.4
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 2.8e-79 299.3 227 68.3
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 4.7e-79 298.5 235 66.4
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 6.1e-79 298.1 234 67.1
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 6.1e-79 298.1 227 67.0
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 6.1e-79 298.1 227 67.0
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 6.1e-79 298.1 227 67.0
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 8.0e-79 297.7 381 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 8.9e-78 294.3 260 60.8
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 8.9e-78 294.3 228 66.2
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 8.9e-78 294.3 241 66.4
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.2e-77 293.9 228 66.7
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 5.7e-77 291.6 272 58.8
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 2.9e-76 289.3 258 59.7
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 1.8e-75 286.6 225 65.8
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 2.4e-75 286.2 228 63.2
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 9.2e-75 284.3 242 62.8
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 2.7e-74 282.7 229 64.6
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 8.6e-73 277.7 274 59.1
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 5.8e-69 265.0 253 58.1
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 2.4e-67 259.6 194 68.0
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 5.1e-57 225.3 261 52.1
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.1e-54 217.6 210 58.6
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 2.3e-54 216.5 204 57.8
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 1.6e-50 203.8 126 77.0
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 2.3e-49 199.9 239 49.8
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 4.3e-40 169.1 224 42.9
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 1.5e-37 160.6 197 45.2
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 7.1e-35 151.8 163 56.4
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.1e-34 150.2 142 51.4
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 1.3e-33 147.5 125 60.8
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 9.0e-30 134.8 202 37.1
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 1.1e-27 127.9 139 48.2
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 3.2e-27 126.3 99 64.6
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 3.5e-26 122.9 70 82.9
Sopen02g032430 Solanum pennellii HOM05D003321 ORTHO05D051122 3.5e-26 122.9 180 42.2
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 1.3e-25 120.9 167 47.3
Hma1.2p1_0105F.1_g050590 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 2.3e-25 120.2 160 45.0
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 3.0e-25 119.8 106 56.6
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 3.9e-25 119.4 78 73.1
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 2.1e-23 113.6 107 55.1
HanXRQChr17g0550931 Helianthus annuus HOM05D003321 ORTHO05D224906 4.5e-21 105.9 74 71.6
Hma1.2p1_0423F.1_g150210 Hydrangea macrophylla HOM05D003321 ORTHO05D228203 4.6e-18 95.9 78 69.2
Cfa021690 Carpinus fangiana HOM05D003321 ORTHO05D005161 7.9e-18 95.1 286 28.3
Zm00001eb277640 Zea mays HOM05D004058 ORTHO05D001984 2.5e-16 90.1 80 67.5
Solyc02g087680.1 Solanum lycopersicum HOM05D003321 ORTHO05D051122 5.7e-16 89.0 111 48.6
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 9.6e-16 88.2 159 40.3
HanXRQChr15g0486151 Helianthus annuus HOM05D003321 ORTHO05D019677 1.1e-14 84.7 86 50.0
HanXRQChr11g0334501 Helianthus annuus HOM05D003321 ORTHO05D019677 3.1e-14 83.2 86 48.8
Hma1.2p1_0235F.1_g098910 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 1.2e-13 81.3 69 56.5
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 5.9e-13 79.0 193 33.7
ECA234G4637 Erigeron canadensis HOM05D003321 ORTHO05D008593 6.1e-10 68.9 69 52.2
MBI10_g19186_MAGBIO Magnolia biondii HOM05D000120 ORTHO05D000068 5.1e-09 65.9 52 67.3


User provided reference genes

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