Gene: PGSC0003DMG400018099
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400018099
- Transcript Identifier PGSC0003DMT400046614
- Gene Type Coding gene
- Location ST4.03ch03 : 52616756-52623029 : negative
Gene Family Information
- ID HOM05D003321
- #Genes/#Species 206/98
- Phylogenetic origin
- ID ORTHO05D005161
- #Genes/#Species 163/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37458921
- id PGSC0003DMG400018099.v4.03
- uniprot M1BJC5
Descriptions
- Description Structure-specific recognition protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006260 | IEA | GOA Database | DNA replication | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0010197 | ISO | PLAZA Integrative Orthology | polar nucleus fusion | AT3G28730 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT3G28730 |
| GO:0000741 | ISO | PLAZA Integrative Orthology | karyogamy | AT3G28730 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0042393 | IBA | GOA Database | histone binding | |
| GO:0031491 | IBA | GOA Database | nucleosome binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G28730 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005694 | IEA | GOA Database | chromosome | |
| GO:0035101 | IBA | GOA Database | FACT complex | |
| GO:0000791 | ISO | PLAZA Integrative Orthology | euchromatin | AT3G28730 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013719 | Domain of unknown function DUF1747 |
| IPR036910 | High mobility group box domain superfamily |
| IPR009071 | High mobility group box domain |
| IPR011993 | PH-like domain superfamily |
| IPR038167 | SSRP1 domain superfamily |
| IPR024954 | SSRP1 domain |
| IPR000969 | Structure-specific recognition protein |
| IPR035417 | FACT complex subunit POB3-like, N-terminal PH domain |
| Mapman id | Description |
|---|---|
| 12.2.2.2 | Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.component SSRP |