Gene: Sopen02g032440
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g032440
- Transcript Identifier Sopen02g032440.1
- Gene Type Coding gene
- Location Spenn-ch02 : 54197597-54204100 : negative
Gene Family Information
- ID HOM05D003321
- #Genes/#Species 206/98
- Phylogenetic origin
- ID ORTHO05D005161
- #Genes/#Species 163/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Sopen02g032440.1
Descriptions
- Description FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle), encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC. | high mobility group (HMG) | CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein , High mobility group, superfamily , High mobility group, HMG1/HMG2 | BEST Arabidopsis thaliana protein match is: high mobility group B1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010197 | ISO | PLAZA Integrative Orthology | polar nucleus fusion | AT3G28730 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT3G28730 |
| GO:0000741 | ISO | PLAZA Integrative Orthology | karyogamy | AT3G28730 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G28730 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0035101 | ISO | PLAZA Integrative Orthology | FACT complex | AT3G28730 |
| GO:0000791 | ISO | PLAZA Integrative Orthology | euchromatin | AT3G28730 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013719 | Domain of unknown function DUF1747 |
| IPR024954 | SSRP1 domain |
| IPR035417 | FACT complex subunit POB3-like, N-terminal PH domain |
| IPR036910 | High mobility group box domain superfamily |
| IPR011993 | PH-like domain superfamily |
| IPR038167 | SSRP1 domain superfamily |
| IPR009071 | High mobility group box domain |
| IPR000969 | Structure-specific recognition protein |
| Mapman id | Description |
|---|---|
| 12.2.2.2 | Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.component SSRP |