Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 6.9e-184 647.1 317 100.0
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 5.5e-165 584.3 317 90.5
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.7e-110 403.3 335 61.5
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 9.5e-109 397.5 334 61.4
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.2e-108 397.1 335 61.5
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 8.9e-107 391.0 338 61.2
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 8.9e-107 391.0 334 60.2
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 5.8e-106 388.3 337 59.1
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.3e-105 387.1 335 59.1
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 4.9e-105 385.2 332 59.9
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 6.4e-105 384.8 331 59.8
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 8.4e-105 384.4 334 61.1
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.1e-104 384.0 333 59.5
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-104 384.0 333 60.4
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.4e-104 383.6 336 61.3
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-104 383.3 355 56.9
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.9e-104 383.3 330 59.4
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.4e-104 382.9 336 58.6
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.4e-104 382.9 334 59.9
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 4.1e-104 382.1 334 60.2
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.4e-104 381.7 335 60.6
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.2e-103 380.6 335 58.5
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.7e-103 379.4 331 59.2
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.0e-103 378.3 335 58.2
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.7e-102 376.7 332 59.3
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.7e-102 376.7 341 61.0
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.3e-102 376.3 341 59.8
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 6.6e-102 374.8 331 58.9
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 6.6e-102 374.8 335 56.7
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-101 373.6 338 58.6
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.9e-101 373.2 333 59.2
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.5e-101 372.9 334 59.0
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 2.5e-101 372.9 337 59.1
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 3.3e-101 372.5 324 59.6
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.3e-101 372.5 335 58.8
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 9.6e-101 370.9 340 59.1
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.6e-100 369.0 284 65.5
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 6.2e-100 368.2 331 57.4
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-99 367.5 335 56.7
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.4e-99 367.1 335 57.6
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.4e-99 367.1 338 58.3
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 2.4e-99 366.3 338 56.2
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 5.2e-99 365.2 336 55.7
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.0e-98 363.2 332 56.6
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 2.0e-98 363.2 334 58.4
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 2.0e-98 363.2 344 58.7
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 4.4e-98 362.1 332 56.3
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.4e-98 362.1 346 59.0
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 5.8e-98 361.7 341 57.5
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 5.8e-98 361.7 331 56.8
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 5.8e-98 361.7 339 58.4
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 7.6e-98 361.3 333 58.0
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 7.6e-98 361.3 334 57.8
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 9.9e-98 360.9 334 57.5
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.3e-97 360.5 334 58.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.3e-97 360.5 333 56.8
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.7e-97 360.1 331 55.6
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.2e-97 359.8 324 56.8
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.8e-97 359.0 332 56.3
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 4.9e-97 358.6 333 57.7
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 6.4e-97 358.2 331 55.6
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 6.4e-97 358.2 333 56.2
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 6.4e-97 358.2 334 58.1
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.4e-97 358.2 342 57.6
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.4e-97 358.2 342 57.6
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 8.4e-97 357.8 334 56.0
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.1e-96 357.5 333 56.2
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.4e-96 356.3 342 59.1
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 5.4e-96 355.1 337 56.4
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 7.1e-96 354.8 337 56.4
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 9.3e-96 354.4 333 55.6
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 9.3e-96 354.4 337 56.1
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.2e-95 354.0 337 56.4
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.1e-95 353.2 327 56.6
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.7e-95 352.8 328 55.8
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 3.5e-95 352.4 334 56.0
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.0e-94 350.9 336 56.8
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.0e-94 350.9 336 57.4
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.9e-94 349.0 337 55.8
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 6.6e-94 348.2 336 56.5
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.1e-93 347.4 346 55.2
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.5e-93 347.1 330 53.9
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.9e-93 346.7 342 53.8
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.3e-92 344.0 378 51.3
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.6e-92 343.6 339 56.6
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.8e-92 342.8 335 55.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 4.8e-92 342.0 325 54.8
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 4.8e-92 342.0 325 54.8
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 4.8e-92 342.0 339 56.3
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 8.1e-92 341.3 334 54.8
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.1e-91 340.9 348 54.6
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.4e-91 339.7 342 55.3
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 4.0e-91 339.0 339 56.0
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 5.3e-91 338.6 342 55.3
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 5.3e-91 338.6 338 55.0
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.6e-90 336.3 333 52.6
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 3.4e-90 335.9 353 53.5
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 7.6e-90 334.7 346 56.1
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 7.6e-90 334.7 353 53.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 9.9e-90 334.3 340 55.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.9e-89 332.8 340 54.1
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 3.8e-89 332.4 341 54.3
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 8.4e-89 331.3 260 63.5
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 9.3e-88 327.8 343 53.1
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.7e-86 321.6 322 52.5
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.9e-85 320.1 350 50.3
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 2.8e-84 316.2 360 51.4
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.8e-83 313.5 326 53.1
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.8e-83 313.5 326 53.1
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 9.0e-83 311.2 327 52.0
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 9.9e-82 307.8 358 52.5
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 3.5e-79 299.3 319 50.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 3.9e-78 295.8 345 50.4
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 6.7e-78 295.0 282 57.4
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 7.4e-77 291.6 329 49.5
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-72 276.9 230 62.2
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.1e-61 241.1 348 39.9
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.9e-61 240.4 382 40.8
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 2.5e-61 240.0 357 43.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 4.1e-59 232.6 331 44.4
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 6.1e-55 218.8 202 55.0
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 1.0e-54 218.0 254 48.0
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.8e-54 217.2 245 48.2
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.0e-54 216.5 362 39.2
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.4e-53 211.8 355 38.9
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 5.0e-49 199.1 189 55.0
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 5.0e-49 199.1 332 39.8
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.1e-47 192.2 214 48.6
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 7.9e-47 191.8 180 56.1
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 8.8e-46 188.3 219 51.1
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 3.1e-43 179.9 271 42.8
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 4.1e-43 179.5 357 34.7
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 1.4e-38 164.5 177 46.3
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.7e-36 157.5 337 34.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.9e-33 146.7 355 33.2
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.1e-27 128.3 114 57.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.1e-24 118.2 145 44.8
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.1e-24 118.2 349 30.9
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.8e-23 113.6 86 54.7
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.6e-23 113.2 108 50.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-22 110.9 86 52.3
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.4e-21 106.3 85 57.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 4.1e-19 99.8 125 44.0
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 7.0e-19 99.0 100 54.0
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 5.0e-17 92.8 144 34.0
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 5.0e-17 92.8 103 42.7
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.8e-15 87.0 268 26.9
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 4.0e-14 83.2 55 63.6
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.4e-11 74.7 58 51.7
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.1e-11 73.2 163 31.3
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 3.5e-10 70.1 171 26.9
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.0e-09 68.6 41 75.6
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-09 68.6 53 56.6
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-06 57.8 43 55.8


User provided reference genes

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