Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 0.0e+00 1189.5 604 100.0
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.5e-291 1005.0 559 92.3
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.9e-239 831.2 556 77.0
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 2.4e-238 828.9 562 77.8
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 9.3e-238 827.0 562 77.4
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 8.7e-236 820.5 561 75.8
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.8e-233 812.8 562 76.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 9.3e-230 800.4 562 74.6
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.8e-226 788.9 566 73.0
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 2.8e-226 788.9 561 74.2
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.7e-226 788.5 563 73.4
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 2.4e-225 785.8 564 74.3
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 2.0e-224 782.7 562 73.5
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 5.8e-224 781.2 570 72.6
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.7e-223 779.6 561 72.5
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.7e-223 779.6 565 72.9
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.9e-223 778.9 563 73.5
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 4.9e-223 778.1 558 73.7
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.4e-222 776.5 570 72.3
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 2.5e-222 775.8 563 73.5
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 5.5e-222 774.6 562 71.5
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.5e-222 774.6 578 71.5
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 5.5e-222 774.6 558 73.5
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 7.1e-222 774.2 561 71.7
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.2e-221 773.5 566 72.3
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 2.1e-221 772.7 564 72.9
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 4.6e-221 771.5 561 72.0
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.9e-220 768.5 561 71.8
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 5.1e-220 768.1 557 72.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 6.7e-220 767.7 560 71.6
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.9e-219 766.1 533 75.8
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 2.5e-219 765.8 558 72.4
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.3e-218 763.5 561 72.0
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 8.2e-218 760.8 561 72.7
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.5e-216 756.5 560 71.8
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 5.9e-216 754.6 563 71.9
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.0e-215 753.8 567 71.4
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.7e-215 753.1 561 72.2
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 2.2e-215 752.7 560 71.8
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 2.9e-215 752.3 560 71.4
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 3.8e-215 751.9 582 70.3
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 3.8e-215 751.9 560 71.2
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 5.0e-215 751.5 563 70.3
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 6.5e-215 751.1 558 72.0
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 3.2e-214 748.8 562 71.5
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 3.2e-214 748.8 558 70.6
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 3.2e-214 748.8 567 70.7
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 3.0e-212 742.3 570 70.5
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.1e-211 740.3 561 71.3
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.7e-210 735.3 561 69.7
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 6.9e-209 731.1 561 69.7
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 9.1e-209 730.7 562 68.7
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 9.1e-209 730.7 559 70.3
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.2e-208 730.3 561 69.2
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.0e-207 727.2 564 70.4
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 2.2e-207 726.1 558 69.7
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.9e-207 725.7 566 69.4
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 6.5e-207 724.5 519 74.2
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 8.5e-207 724.2 562 69.2
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.1e-206 723.8 561 68.8
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 1.9e-206 723.0 623 62.6
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 3.2e-206 722.2 562 68.9
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 7.2e-206 721.1 569 69.1
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 9.4e-206 720.7 562 68.7
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 5.1e-204 714.9 550 69.3
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 4.4e-203 711.8 563 67.7
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.8e-202 708.4 566 67.3
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-201 707.2 566 67.1
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.1e-201 707.2 563 68.6
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.4e-201 706.8 553 69.3
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.4e-201 706.1 569 68.2
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 3.1e-201 705.7 566 67.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.1e-201 705.3 566 67.0
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-200 703.4 556 69.1
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.3e-199 700.3 569 67.1
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.9e-199 699.1 561 68.1
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 8.5e-199 697.6 539 69.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.9e-198 696.4 664 59.9
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 4.2e-198 695.3 563 67.7
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 5.5e-198 694.9 545 67.5
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-197 693.7 593 64.2
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 3.7e-194 682.2 728 54.3
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 9.1e-193 677.6 560 65.5
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 2.9e-191 672.5 573 65.6
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.9e-191 672.5 527 68.1
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 6.5e-191 671.4 518 69.9
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 9.4e-190 667.5 566 66.8
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.6e-189 666.8 577 63.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 1.6e-189 666.8 549 64.3
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 3.3e-187 659.1 539 65.7
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.4e-185 653.7 558 63.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 3.1e-185 652.5 550 63.5
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.6e-184 650.2 567 64.4
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 4.5e-184 648.7 539 65.1
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 4.5e-184 648.7 539 65.1
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 4.5e-184 648.7 539 65.1
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 5.9e-184 648.3 508 68.7
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 5.0e-183 645.2 569 61.2
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 5.0e-183 645.2 538 63.8
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.9e-182 643.3 538 63.8
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 6.1e-181 638.3 550 64.5
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.4e-180 637.1 555 63.1
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 7.5e-179 631.3 558 61.8
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 2.2e-178 629.8 512 65.8
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.8e-177 626.7 540 63.0
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 7.7e-176 621.3 539 62.5
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 2.8e-173 612.8 471 68.6
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 4.7e-173 612.1 419 75.4
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 9.2e-161 571.2 585 57.1
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 7.8e-144 515.0 386 72.0
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 5.3e-132 475.7 594 49.2
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 3.1e-124 449.9 596 48.2
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 3.2e-121 439.9 265 81.9
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.6e-118 429.1 338 66.6
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-113 414.8 504 49.6
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-113 414.8 504 49.6
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-113 414.8 504 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 2.4e-108 397.1 484 52.5
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 4.1e-84 316.6 196 80.6
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.1e-78 298.5 160 90.6
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 5.9e-75 286.2 165 86.1
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.9e-73 281.2 239 63.6
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.7e-69 268.1 194 72.2
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 1.1e-68 265.4 541 39.0
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 3.5e-67 260.4 235 63.4
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.5e-65 255.0 362 45.9
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 2.1e-64 251.1 424 40.3
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 1.0e-63 248.8 305 51.8
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 5.0e-58 229.9 134 79.9
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 2.8e-53 214.2 271 48.0
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 2.0e-51 208.0 155 71.0
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-49 202.2 134 73.1
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 3.6e-48 197.2 169 67.5
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 4.9e-45 186.8 115 80.9
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.0e-42 179.1 405 34.8
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 7.3e-41 172.9 182 59.3
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 4.3e-33 147.1 149 59.1
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 8.9e-31 139.4 157 58.6
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.2e-29 134.8 77 84.4
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 3.5e-27 127.5 591 29.1
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-25 122.1 89 67.4
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.2e-24 119.0 111 60.4
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 5.2e-23 113.6 75 73.3
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.4e-20 105.5 58 89.7
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 9.3e-20 102.8 67 76.1
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.7e-18 98.6 82 61.0
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 6.6e-18 96.7 70 74.3
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.3e-17 94.4 64 73.4
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-15 87.8 150 38.0
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.3e-15 87.0 52 82.7
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 5.3e-15 87.0 122 44.3
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 2.7e-11 74.7 49 77.6
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 6.6e-10 70.1 84 41.7
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.6e-10 70.1 66 59.1
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 6.2e-08 63.5 36 83.3
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 5.3e-07 60.5 34 70.6
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 4.5e-06 57.4 63 46.0


User provided reference genes

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