Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 0.0e+00 1131.7 570 100.0
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.7e-292 1007.3 559 92.3
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 5.5e-256 887.5 569 79.8
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 3.5e-255 884.8 573 79.9
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 6.7e-254 880.6 572 78.3
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.7e-253 877.5 574 79.6
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 1.9e-248 862.4 573 77.8
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 3.9e-246 854.7 573 77.0
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 7.4e-245 850.5 575 77.2
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 4.8e-244 847.8 572 76.6
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 4.1e-243 844.7 569 75.9
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 5.3e-243 844.3 573 76.3
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.3e-243 844.3 574 75.8
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 2.2e-241 839.0 566 75.4
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.1e-240 836.6 572 75.2
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.4e-240 836.3 585 74.5
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 5.5e-240 834.3 572 75.9
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 7.2e-240 833.9 574 76.0
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 9.4e-240 833.6 571 75.7
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 1.2e-239 833.2 571 75.5
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 1.6e-239 832.8 572 74.5
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 3.6e-239 831.6 585 74.2
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.0e-238 830.1 572 74.8
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 5.1e-238 827.8 577 74.5
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 5.1e-238 827.8 572 75.2
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 8.8e-238 827.0 572 74.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 8.8e-238 827.0 581 74.5
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.5e-237 825.5 590 73.7
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 4.3e-237 824.7 571 74.3
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 9.7e-237 823.5 576 74.8
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 9.7e-237 823.5 572 73.8
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 8.2e-236 820.5 571 74.6
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.1e-235 820.1 548 77.2
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 6.9e-235 817.4 572 75.5
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 2.9e-233 812.0 593 73.0
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 2.9e-233 812.0 575 74.1
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 2.9e-233 812.0 574 74.2
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 3.8e-233 811.6 572 74.3
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.8e-233 811.6 572 74.5
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 8.5e-233 810.4 567 74.3
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 3.2e-232 808.5 572 73.8
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 4.2e-232 808.1 573 74.5
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 7.2e-232 807.4 578 73.5
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 9.4e-232 807.0 575 72.9
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 6.1e-231 804.3 573 72.8
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.0e-229 799.3 579 73.1
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 4.4e-229 798.1 573 73.5
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 9.7e-229 797.0 580 73.1
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.8e-228 795.4 573 73.3
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 6.3e-228 794.3 573 73.1
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.4e-227 793.1 577 73.0
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.2e-226 790.0 573 72.6
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 1.6e-226 789.6 572 72.2
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.0e-225 786.9 568 73.8
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 2.2e-225 785.8 561 73.1
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.8e-225 785.0 573 72.1
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.5e-225 783.9 522 77.8
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.5e-224 783.1 573 72.3
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 7.2e-224 780.8 566 71.0
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 7.2e-224 780.8 574 72.5
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 9.4e-224 780.4 574 72.1
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.7e-223 778.9 574 72.0
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.6e-223 778.5 574 71.4
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 7.5e-221 770.8 635 65.7
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.8e-219 766.1 550 72.2
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 7.0e-219 764.2 567 70.4
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 5.9e-218 761.1 553 72.7
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 7.7e-218 760.8 578 70.4
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 2.9e-217 758.8 584 70.0
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.8e-217 758.4 568 70.8
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 6.5e-217 757.7 569 69.9
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.5e-217 757.3 569 69.9
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.5e-217 757.3 569 69.9
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.5e-216 756.5 569 69.9
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 2.5e-216 755.7 570 70.2
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 4.2e-216 755.0 565 71.2
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.1e-215 752.7 556 70.5
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 6.1e-215 751.1 581 69.4
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 6.8e-214 747.7 676 61.8
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.2e-212 742.7 596 66.8
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.8e-211 739.6 539 72.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 4.5e-210 734.9 591 67.7
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.2e-208 728.4 566 67.7
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.7e-207 725.7 739 56.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 1.8e-206 723.0 560 67.1
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 3.0e-206 722.2 594 65.7
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 6.8e-206 721.1 518 72.8
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.7e-204 716.5 577 69.2
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 6.3e-204 714.5 554 68.2
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 2.0e-202 709.5 561 66.5
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 7.7e-202 707.6 580 64.5
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-201 706.1 548 68.2
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 2.3e-201 706.1 548 68.2
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 2.3e-201 706.1 548 68.2
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.9e-201 705.7 558 66.5
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 1.1e-200 703.7 508 72.4
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 3.3e-200 702.2 548 67.5
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 1.2e-199 700.3 548 67.5
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 4.0e-198 695.3 559 66.4
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 5.2e-198 694.9 569 67.1
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 9.8e-197 690.6 563 65.4
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 8.3e-196 687.6 562 65.7
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 4.1e-195 685.3 565 66.0
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 2.3e-193 679.5 550 65.6
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.5e-192 676.8 515 68.7
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 3.2e-187 659.1 576 63.5
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 8.6e-185 651.0 490 69.2
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 5.6e-176 621.7 590 59.8
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.2e-173 614.0 419 74.9
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 4.8e-143 512.3 598 51.2
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 6.2e-143 511.9 386 70.5
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.8e-137 493.8 610 50.2
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 2.5e-128 463.4 510 52.7
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 2.5e-128 463.4 510 52.7
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 2.5e-128 463.4 510 52.7
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.7e-124 450.7 488 55.5
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 8.8e-121 438.3 264 81.4
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.0e-116 424.9 351 63.8
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 4.5e-85 319.7 196 81.1
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 2.1e-82 310.8 362 51.4
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 8.9e-81 305.4 237 71.3
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-80 304.3 254 65.0
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 4.4e-80 303.1 553 41.0
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 6.4e-79 299.3 336 55.1
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 9.2e-78 295.4 160 89.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 8.0e-74 282.3 151 90.7
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.7e-68 264.6 166 81.3
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.3e-68 264.2 194 70.6
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 1.5e-64 251.5 424 40.1
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 6.6e-60 236.1 281 49.8
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 6.8e-57 226.1 134 77.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-51 208.8 426 37.1
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 6.2e-50 203.0 169 67.5
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.8e-49 201.4 134 73.1
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 5.1e-44 183.3 115 80.0
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 9.0e-41 172.6 179 57.0
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 7.6e-40 169.5 591 30.3
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 4.9e-39 166.8 123 73.2
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-33 149.1 220 45.0
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 3.8e-31 140.6 156 53.8
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.0e-28 132.5 70 90.0
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.4e-25 122.1 89 67.4
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 4.9e-23 113.6 75 73.3
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 2.3e-20 104.8 58 89.7
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 5.7e-19 100.1 67 74.6
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 9.7e-19 99.4 70 75.7
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 2.2e-18 98.2 82 59.8
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.4e-17 94.7 69 68.1
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-15 88.6 150 38.0
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.7e-15 88.6 658 23.3
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 6.5e-15 86.7 126 43.7
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 8.5e-15 86.3 85 55.3
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.2e-14 84.3 52 80.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 9.7e-11 72.8 49 75.5
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 6.3e-10 70.1 84 40.5
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.1e-09 67.4 66 57.6
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 7.7e-08 63.2 36 83.3
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 1.9e-06 58.5 63 46.0
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 7.2e-06 56.6 63 44.4


User provided reference genes

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