Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 0.0e+00 1733.0 871 100.0
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 3.9e-261 905.2 966 52.0
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 2.4e-250 869.4 959 50.8
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 2.1e-243 846.3 913 50.9
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 8.4e-240 834.3 960 48.5
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 5.4e-239 831.6 937 49.7
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 9.3e-239 830.9 966 48.0
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 1.5e-236 823.5 972 47.9
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.3e-235 820.5 965 47.6
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 1.6e-235 820.1 955 48.3
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 2.8e-235 819.3 959 47.8
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 1.1e-234 817.4 945 48.0
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 1.1e-231 807.4 962 47.3
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 7.1e-231 804.7 958 47.7
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 9.3e-231 804.3 959 48.3
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 1.6e-230 803.5 959 46.1
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 6.0e-230 801.6 921 48.1
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 1.3e-229 800.4 966 46.9
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 1.5e-228 797.0 956 47.4
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 3.3e-228 795.8 948 47.0
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 1.6e-227 793.5 949 47.5
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 2.1e-227 793.1 915 48.0
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 6.2e-227 791.6 970 45.2
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 3.1e-226 789.3 963 46.0
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 4.0e-226 788.9 960 47.7
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 2.0e-225 786.6 961 47.1
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 2.0e-225 786.6 940 47.2
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 2.0e-225 786.6 964 46.2
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 4.5e-225 785.4 952 47.0
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 1.0e-224 784.3 951 47.3
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 1.0e-224 784.3 947 46.3
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 2.2e-224 783.1 957 45.8
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 2.2e-224 783.1 949 46.4
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 4.9e-224 781.9 962 44.9
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 8.4e-224 781.2 911 48.6
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 3.2e-223 779.2 937 46.9
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 3.2e-223 779.2 968 45.5
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 5.5e-223 778.5 949 47.2
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 1.2e-222 777.3 958 45.5
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 3.5e-222 775.8 918 47.4
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 3.5e-222 775.8 950 46.4
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.6e-222 775.4 896 48.8
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 4.6e-222 775.4 959 46.2
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 6.0e-222 775.0 847 49.8
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 1.0e-221 774.2 950 45.9
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 1.0e-221 774.2 840 49.9
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 1.0e-221 774.2 956 47.0
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 2.3e-221 773.1 950 46.3
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 6.7e-221 771.5 953 46.2
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 1.5e-220 770.4 963 44.8
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 3.3e-220 769.2 959 46.2
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 3.7e-219 765.8 960 45.7
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 4.8e-219 765.4 950 46.1
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 6.2e-219 765.0 955 46.1
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 8.2e-219 764.6 961 45.1
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 1.1e-218 764.2 950 45.8
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 1.8e-218 763.5 935 45.7
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 1.8e-218 763.5 957 45.8
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 5.3e-218 761.9 952 46.8
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 2.0e-217 760.0 945 45.5
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 3.4e-217 759.2 915 46.2
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 3.8e-216 755.7 948 44.9
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 8.4e-216 754.6 968 44.9
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 1.1e-215 754.2 961 45.1
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 1.4e-215 753.8 935 46.2
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 1.9e-215 753.4 936 45.1
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 7.1e-215 751.5 953 44.6
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 6.1e-214 748.4 952 45.5
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 1.0e-213 747.7 964 44.7
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 1.0e-213 747.7 953 45.4
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 1.3e-213 747.3 949 44.5
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 3.3e-212 742.7 942 44.5
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 6.3e-211 738.4 952 45.3
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 6.9e-210 734.9 948 44.2
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 1.7e-208 730.3 950 44.7
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 1.4e-207 727.2 944 45.3
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 2.5e-207 726.5 950 44.9
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 4.2e-207 725.7 951 44.1
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 9.4e-207 724.5 955 43.8
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 7.4e-204 714.9 917 44.2
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 1.7e-203 713.8 952 42.8
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 6.9e-202 708.4 950 43.6
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 4.5e-201 705.7 617 60.1
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 1.3e-200 704.1 938 43.9
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 1.3e-200 704.1 938 43.9
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 2.2e-200 703.4 932 44.1
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 2.2e-200 703.4 935 44.0
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 6.5e-200 701.8 936 43.9
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 1.4e-199 700.7 890 44.3
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 2.1e-198 696.8 953 43.4
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 1.1e-196 691.0 922 43.8
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 5.3e-194 682.2 960 42.7
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 4.5e-185 652.5 946 41.9
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 2.5e-183 646.7 942 41.3
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 9.8e-180 634.8 963 41.8
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 5.5e-175 619.0 640 53.3
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 7.2e-175 618.6 619 53.8
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 8.0e-174 615.1 834 42.2
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 5.9e-161 572.4 945 37.5
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 1.2e-142 511.5 483 56.5
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.4e-141 508.1 888 35.5
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 6.8e-141 505.8 884 35.5
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 9.6e-135 485.3 853 35.5
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.7e-131 474.6 804 40.2
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 8.1e-126 455.7 943 33.2
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 6.0e-105 386.3 585 38.1
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.5e-92 345.1 528 40.3
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 5.9e-76 290.0 234 59.8
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 1.2e-68 265.8 719 27.5
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.0e-64 251.1 504 33.1
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 6.3e-54 216.9 264 50.0
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.5e-42 178.3 216 44.9
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.7e-30 139.0 117 57.3
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 6.0e-28 130.6 110 58.2
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 3.0e-11 75.1 93 39.8
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 2.0e-07 62.4 63 50.8


User provided reference genes

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