Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.4e-176 622.9 311 100.0
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.2e-145 520.0 288 91.7
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.4e-125 453.4 315 74.0
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.8e-120 436.4 315 71.7
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.3e-120 434.9 313 71.2
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.3e-120 434.9 313 71.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 5.3e-120 434.9 313 71.2
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 9.0e-120 434.1 311 71.7
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.2e-119 433.7 313 69.3
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.8e-119 431.4 309 71.2
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.7e-118 429.9 313 69.0
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.7e-118 429.9 312 70.2
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 6.5e-118 427.9 316 68.0
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 6.5e-118 427.9 316 69.0
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.9e-117 426.4 311 70.7
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.5e-117 426.0 311 70.7
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.5e-117 426.0 311 70.7
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 3.2e-117 425.6 316 69.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 4.2e-117 425.2 323 66.9
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 4.2e-117 425.2 317 68.1
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 4.2e-117 425.2 317 68.1
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 5.5e-117 424.9 317 68.1
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.6e-116 421.8 311 69.5
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 6.1e-116 421.4 319 69.3
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 6.1e-116 421.4 317 67.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 7.9e-116 421.0 312 69.9
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.8e-115 419.9 317 68.5
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.8e-115 419.9 317 68.5
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.8e-115 419.9 315 68.9
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 2.3e-115 419.5 313 68.1
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 3.0e-115 419.1 315 67.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 8.7e-115 417.5 311 67.8
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.1e-114 417.2 316 67.4
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.5e-114 416.8 322 67.1
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.9e-114 416.4 319 68.3
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 3.3e-114 415.6 315 67.3
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 4.3e-114 415.2 317 66.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 4.3e-114 415.2 319 66.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 9.7e-114 414.1 311 67.2
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 9.7e-114 414.1 311 67.2
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.8e-113 412.5 320 67.2
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.8e-113 412.5 311 66.9
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 4.8e-113 411.8 320 65.9
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 8.2e-113 411.0 315 67.6
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.1e-112 410.6 313 66.8
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.1e-112 409.1 313 68.1
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 3.1e-112 409.1 311 67.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 5.3e-112 408.3 317 66.6
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 6.9e-112 407.9 316 68.0
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.2e-111 407.1 314 66.9
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.2e-111 407.1 316 66.1
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.5e-111 406.8 312 66.3
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 1.5e-111 406.8 313 67.1
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.5e-111 406.8 316 67.4
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.6e-111 406.0 312 67.0
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.6e-111 406.0 309 68.9
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 3.4e-111 405.6 314 66.6
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 5.9e-111 404.8 349 61.0
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.0e-110 404.1 326 65.0
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.7e-110 403.3 315 67.0
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.7e-110 403.3 314 66.6
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.8e-110 402.1 323 64.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.9e-109 399.8 319 65.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 3.2e-109 399.1 315 66.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 3.2e-109 399.1 314 65.3
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 5.5e-109 398.3 315 66.7
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 7.2e-109 397.9 314 64.3
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.2e-108 397.1 317 65.9
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.6e-108 396.7 316 65.8
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.1e-108 396.4 311 65.6
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.1e-108 396.4 311 65.6
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.1e-108 396.4 312 66.0
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.1e-108 396.4 315 66.0
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 3.6e-108 395.6 311 65.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 3.6e-108 395.6 318 64.8
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 4.6e-108 395.2 319 65.8
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.0e-107 394.0 314 65.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.0e-107 394.0 314 65.6
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 2.3e-107 392.9 311 65.9
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.0e-107 392.5 345 61.2
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 3.0e-107 392.5 311 65.3
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 3.0e-107 392.5 311 65.3
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 3.0e-107 392.5 311 65.3
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 3.0e-107 392.5 311 63.7
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 3.9e-107 392.1 311 64.6
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 6.7e-107 391.3 312 65.7
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 6.7e-107 391.3 314 66.2
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 6.7e-107 391.3 311 66.2
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 8.8e-107 391.0 312 65.1
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.5e-106 390.2 312 64.4
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 7.4e-106 387.9 311 65.0
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 9.7e-106 387.5 313 64.2
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.3e-105 387.1 224 85.7
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.3e-105 387.1 313 64.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 4.8e-105 385.2 319 63.0
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 6.9e-104 381.3 332 61.4
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.2e-102 376.3 343 58.0
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 3.8e-102 375.6 334 60.2
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 6.5e-102 374.8 313 62.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 8.5e-102 374.4 255 74.5
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.9e-101 373.2 340 58.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.2e-101 372.5 287 65.5
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 9.7e-98 360.9 310 57.7
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.5e-95 352.1 317 58.0
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.7e-94 350.1 292 63.0
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.8e-94 349.0 242 71.9
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 9.4e-93 344.4 264 69.7
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.1e-92 343.2 314 62.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 5.2e-91 338.6 211 80.6
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 9.7e-90 334.3 203 81.3
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.0e-88 328.2 252 67.1
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 2.0e-87 326.6 316 56.0
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.7e-86 323.6 269 62.1
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.5e-85 318.5 228 70.6
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.4e-83 313.9 312 56.4
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 2.8e-81 306.2 313 54.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 6.1e-76 288.5 185 77.3
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 4.0e-67 259.2 414 40.6
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 3.4e-66 256.1 296 51.0
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 5.4e-64 248.8 181 69.6
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.9e-62 242.7 250 56.0
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 7.0e-56 221.9 191 65.4
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 6.0e-55 218.8 386 38.6
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.1e-48 198.0 227 47.1
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.5e-45 187.6 251 47.4
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.7e-44 182.6 312 39.7
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 8.1e-44 181.8 117 78.6
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.8e-43 180.6 288 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.6e-42 176.8 204 46.1
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 2.4e-40 170.2 192 48.4
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 5.4e-40 169.1 152 58.6
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 5.1e-38 162.5 95 87.4
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.0e-34 150.6 249 42.2
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.7e-33 147.5 122 65.6
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.4e-32 144.4 96 78.1
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.5e-31 139.8 126 59.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.5e-31 139.8 126 59.5
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.0e-30 138.3 93 77.4
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-27 127.9 190 37.4
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.6e-26 123.6 85 69.4
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 4.6e-23 112.8 144 43.8
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 6.0e-23 112.5 243 35.4
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.3e-22 110.5 95 64.2
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-17 94.4 62 79.0
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.9e-17 92.8 79 63.3
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.3e-11 72.8 81 40.7
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.4e-10 70.1 42 66.7
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 5.8e-10 69.3 45 62.2
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.1e-08 65.1 40 65.0
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 1.4e-08 64.7 45 60.0
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 1.9e-08 64.3 128 32.8
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 4.2e-08 63.2 40 62.5
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 5.5e-08 62.8 39 66.7
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 5.5e-08 62.8 38 63.2
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 9.3e-08 62.0 87 40.2
Manes.04G072100 Manihot esculenta HOM05D002972 ORTHO05D002272 1.6e-07 61.2 46 52.2
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 1.6e-07 61.2 41 61.0
Sabra04G0118200 Salix brachista HOM05D002972 ORTHO05D002272 1.6e-07 61.2 46 50.0
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.1e-07 60.8 62 56.5
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 4.6e-07 59.7 41 56.1
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 6.0e-07 59.3 37 62.2
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.3e-06 58.2 60 38.3
MD10G1125400 Malus domestica HOM05D002972 ORTHO05D002272 1.8e-06 57.8 42 57.1
Potri.009G136400 Populus trichocarpa HOM05D002972 ORTHO05D002272 1.8e-06 57.8 41 53.7
MD05G1122800 Malus domestica HOM05D002972 ORTHO05D002272 3.0e-06 57.0 42 52.4
TWI79G0168 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 3.9e-06 56.6 57 45.6
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 5.1e-06 56.2 40 67.5
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 6.7e-06 55.8 140 30.0
Gohir.D12G035500 Gossypium hirsutum HOM05D002972 ORTHO05D002272 6.7e-06 55.8 45 48.9
Gorai.008G036800 Gossypium raimondii HOM05D002972 ORTHO05D002272 6.7e-06 55.8 45 48.9


User provided reference genes

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