Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 0.0e+00 2835.4 1407 100.0
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 7.5e-307 1057.7 1662 40.3
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 3.2e-297 1025.8 1642 39.9
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 8.9e-292 1007.7 1641 38.6
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 2.6e-291 1006.1 1642 39.3
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 3.8e-290 1002.3 1666 39.0
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 8.7e-287 991.1 1646 39.1
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 3.3e-278 962.6 1659 38.3
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 5.3e-276 955.3 1681 37.5
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 1.4e-273 947.2 1663 37.8
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 1.3e-271 940.6 1679 37.5
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 8.7e-271 937.9 1688 37.7
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 5.6e-270 935.3 1655 37.9
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 3.7e-269 932.6 1664 38.3
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 8.1e-269 931.4 1654 37.1
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 1.8e-268 930.2 1673 37.8
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 1.8e-268 930.2 1661 38.2
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 3.1e-268 929.5 1660 37.5
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 4.0e-268 929.1 1675 36.9
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 1.2e-267 927.5 1693 37.2
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 1.5e-267 927.2 1660 37.0
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 2.6e-267 926.4 1659 37.6
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 4.5e-267 925.6 1673 37.5
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 4.5e-267 925.6 1663 36.7
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 7.6e-267 924.9 1675 37.0
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 2.2e-266 923.3 1677 37.4
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 6.5e-266 921.8 1658 37.6
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 1.1e-265 921.0 1678 37.3
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 5.5e-265 918.7 1669 37.1
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 9.3e-265 917.9 1673 37.2
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 9.3e-265 917.9 1661 37.3
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 4.6e-264 915.6 1673 37.5
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 7.9e-264 914.8 1646 37.0
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 1.0e-263 914.4 1622 37.2
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 2.3e-263 913.3 1675 37.8
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 2.3e-263 913.3 1681 38.3
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 3.0e-263 912.9 1651 37.5
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 1.1e-262 911.0 1673 36.6
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 1.5e-262 910.6 1678 36.8
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 1.5e-262 910.6 1636 36.4
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 5.7e-262 908.7 1674 37.0
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 1.3e-261 907.5 1661 37.3
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 1.3e-261 907.5 1676 36.8
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 2.8e-261 906.4 1611 36.6
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 2.8e-261 906.4 1687 36.0
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 2.8e-261 906.4 1657 37.4
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 1.1e-260 904.4 1643 37.6
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 1.8e-260 903.7 1614 37.2
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 1.8e-260 903.7 1659 37.2
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 6.9e-260 901.7 1677 36.6
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 2.6e-259 899.8 1670 37.5
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 1.0e-258 897.9 1668 36.3
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 2.9e-258 896.3 1648 37.3
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 1.1e-257 894.4 1648 36.8
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 1.1e-257 894.4 1681 36.6
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 7.1e-257 891.7 1633 36.6
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 2.7e-256 889.8 1672 36.1
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 2.3e-255 886.7 1670 36.4
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 6.7e-255 885.2 1656 36.2
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 6.7e-255 885.2 1603 36.5
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.1e-254 884.4 1639 36.1
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 4.3e-254 882.5 1686 35.9
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 1.3e-253 880.9 1707 35.9
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.6e-253 880.6 1659 36.3
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 3.7e-253 879.4 1704 35.8
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 4.8e-253 879.0 1675 35.9
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.1e-252 877.9 1707 35.9
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.4e-252 876.7 1677 36.1
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 4.1e-252 875.9 1705 36.0
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 6.9e-252 875.2 1649 35.5
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.0e-251 873.6 1658 35.6
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 1.7e-250 870.5 1662 36.0
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.9e-249 867.1 1661 35.4
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 3.2e-249 866.3 1664 35.5
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 3.2e-249 866.3 1659 36.0
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 5.5e-249 865.5 1630 36.2
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 9.4e-249 864.8 1596 36.5
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.0e-247 861.3 1642 35.9
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 3.0e-247 859.8 1641 36.0
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 3.9e-247 859.4 1670 35.3
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 5.1e-247 859.0 1642 35.8
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.5e-246 856.7 1657 36.0
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 2.2e-245 853.6 1605 36.4
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.4e-244 850.9 1680 35.5
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 2.4e-244 850.1 1428 38.0
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 1.2e-243 847.8 1734 34.7
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 2.0e-243 847.0 1616 35.8
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 5.9e-243 845.5 1617 36.1
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 1.3e-242 844.3 1615 35.6
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 2.2e-242 843.6 1663 35.3
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 3.8e-242 842.8 1692 35.3
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 3.2e-241 839.7 1595 36.9
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 3.2e-241 839.7 1674 35.4
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 4.2e-241 839.3 1615 35.5
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 2.1e-240 837.0 1620 36.0
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 1.0e-239 834.7 1615 36.4
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 1.4e-239 834.3 1744 34.5
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 8.8e-239 831.6 1585 36.0
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 4.4e-238 829.3 1585 35.9
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 9.7e-238 828.2 1613 36.2
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 2.2e-237 827.0 1629 35.3
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 1.8e-236 823.9 1628 35.7
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 2.0e-235 820.5 1578 35.7
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 2.0e-235 820.5 1641 36.2
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 2.0e-235 820.5 1627 35.5
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 2.6e-235 820.1 1578 35.7
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 5.9e-235 818.9 1578 35.7
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 2.7e-232 810.1 1627 36.3
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 2.7e-232 810.1 1759 33.7
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 3.3e-230 803.1 1632 35.0
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 7.5e-230 802.0 1644 35.2
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 7.5e-230 802.0 1637 35.2
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 7.7e-227 792.0 1246 40.2
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 9.8e-222 775.0 1606 34.2
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 3.1e-220 770.0 1227 40.9
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.8e-204 717.6 1781 31.8
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 9.5e-201 705.3 1621 32.6
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 1.8e-199 701.0 1574 34.1
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 3.1e-199 700.3 1643 32.3
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 7.5e-198 695.7 1638 33.2
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 4.9e-197 693.0 1652 32.3
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 2.4e-196 690.6 1202 37.8
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 3.3e-193 680.2 1233 37.0
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.4e-188 664.1 1786 29.7
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 7.1e-188 662.5 1782 30.3
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 6.0e-187 659.4 1642 32.0
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 1.9e-185 654.4 1837 30.1
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-182 645.2 1734 30.2
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-182 645.2 1734 30.2
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 6.4e-181 639.4 1220 36.4
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 1.9e-153 548.1 1184 34.1
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 4.8e-152 543.5 1312 33.2
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 3.5e-147 527.3 866 41.3
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 4.6e-147 526.9 873 40.1
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 5.0e-141 506.9 944 35.9
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 2.3e-122 444.9 1751 25.1
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 1.7e-112 412.1 607 40.5
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 8.2e-112 409.8 1451 27.6
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 1.6e-99 369.0 461 45.8
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 8.3e-96 356.7 1050 32.5
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 1.6e-94 352.4 837 34.2
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 8.6e-69 266.9 934 28.1
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 6.4e-64 250.8 435 36.1
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 9.2e-63 246.9 339 46.3
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.7e-62 245.4 466 36.3
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 3.5e-62 245.0 463 35.9
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 3.9e-61 241.5 444 36.7
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 8.9e-58 230.3 294 44.9
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 1.6e-51 209.5 430 34.9
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 4.0e-50 204.9 349 37.0
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 9.6e-44 183.7 1341 21.5
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 1.8e-42 179.5 166 51.8
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 9.0e-42 177.2 420 31.0
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.0e-37 162.2 1349 22.4
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.2e-35 154.5 1329 22.3
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 1.4e-34 153.3 1244 21.6
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 5.3e-34 151.4 1377 21.3
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.2e-31 141.7 1324 22.0
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.3e-29 136.0 1357 20.7
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 9.0e-26 124.0 155 43.2
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 2.6e-25 122.5 444 26.4
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 2.6e-25 122.5 255 32.9
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 3.8e-24 118.6 165 35.8
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-22 113.6 690 24.1
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 3.6e-22 112.1 265 33.2
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 4.3e-20 105.1 122 45.9
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 1.9e-15 89.7 60 68.3
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 8.8e-13 80.9 80 52.5
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 4.8e-11 75.1 138 33.3
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 6.3e-11 74.7 125 36.0
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-10 73.9 93 37.6
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.0e-09 69.7 47 63.8
vmacro07102 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 2.0e-09 69.7 77 48.1
Psat5g038080 Pisum sativum HOM05D001700 ORTHO05D016448 1.9e-07 63.2 142 31.0


User provided reference genes

Program Settings