Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2729 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 1.7e-134 482.6 234 100.0
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.3e-81 307.0 199 73.4
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 2.8e-81 305.8 199 73.4
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 1.4e-80 303.5 198 70.2
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 1.4e-80 303.5 199 72.9
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 2.4e-80 302.8 199 72.4
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 5.3e-80 301.6 199 73.4
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 2.6e-79 299.3 199 71.4
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 3.4e-79 298.9 199 68.8
MBI16_g39317_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 4.5e-79 298.5 209 69.4
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.7e-78 296.6 199 70.4
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 2.2e-78 296.2 199 69.8
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 2.9e-78 295.8 199 71.4
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 6.4e-78 294.7 198 70.2
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 8.4e-78 294.3 199 69.8
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 8.4e-78 294.3 199 70.4
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.9e-77 293.1 199 70.4
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 1.9e-77 293.1 199 69.3
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 2.4e-77 292.7 199 69.8
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 2.4e-77 292.7 204 68.1
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 3.2e-77 292.4 199 70.9
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 3.2e-77 292.4 201 68.2
Oeu026584.1 Olea europaea HOM05D003508 ORTHO05D004579 3.2e-77 292.4 206 68.0
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 3.2e-77 292.4 199 69.8
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 4.2e-77 292.0 199 69.8
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 7.1e-77 291.2 198 69.7
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 9.3e-77 290.8 199 68.3
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 9.3e-77 290.8 200 68.0
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 9.3e-77 290.8 198 68.7
Oeu025589.3 Olea europaea HOM05D003508 ORTHO05D004579 9.3e-77 290.8 200 67.5
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 1.6e-76 290.0 199 68.3
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 1.6e-76 290.0 199 70.9
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 2.1e-76 289.7 203 68.5
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 2.7e-76 289.3 199 68.8
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 3.5e-76 288.9 203 66.5
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 3.5e-76 288.9 213 66.7
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 4.6e-76 288.5 200 70.0
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 4.6e-76 288.5 198 68.2
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 4.6e-76 288.5 199 65.3
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 4.6e-76 288.5 199 66.3
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 6.0e-76 288.1 199 68.8
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 6.0e-76 288.1 199 69.3
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 7.9e-76 287.7 199 69.8
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 1.0e-75 287.3 199 64.8
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 1.3e-75 287.0 214 65.4
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 1.3e-75 287.0 199 69.3
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 1.8e-75 286.6 199 67.8
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 1.8e-75 286.6 200 69.0
DCAR_006338 Daucus carota HOM05D003508 ORTHO05D004579 1.8e-75 286.6 198 67.7
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 2.3e-75 286.2 199 68.3
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 2.3e-75 286.2 199 69.3
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 3.0e-75 285.8 198 67.7
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 3.0e-75 285.8 199 68.8
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 3.9e-75 285.4 210 63.8
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 3.9e-75 285.4 199 67.8
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 5.1e-75 285.0 199 68.3
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 5.1e-75 285.0 198 68.2
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 5.1e-75 285.0 199 68.8
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 6.7e-75 284.6 199 69.3
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 6.7e-75 284.6 199 69.3
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 6.7e-75 284.6 199 65.3
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 8.7e-75 284.3 199 68.8
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 8.7e-75 284.3 199 66.3
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 8.7e-75 284.3 198 67.7
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 8.7e-75 284.3 199 65.3
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 8.7e-75 284.3 199 68.3
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 1.1e-74 283.9 199 67.8
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 1.5e-74 283.5 199 67.8
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 1.9e-74 283.1 199 68.8
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 1.9e-74 283.1 199 68.8
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 1.9e-74 283.1 199 68.8
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 1.9e-74 283.1 199 67.3
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 1.9e-74 283.1 199 67.8
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.9e-74 283.1 199 65.8
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 1.9e-74 283.1 199 67.8
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 2.5e-74 282.7 199 67.8
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 3.3e-74 282.3 199 67.8
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 4.3e-74 282.0 199 68.3
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 4.3e-74 282.0 199 68.3
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 4.3e-74 282.0 199 67.8
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 5.6e-74 281.6 209 66.0
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 5.6e-74 281.6 199 68.3
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 5.6e-74 281.6 199 68.3
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 5.6e-74 281.6 199 65.8
Gohir.D13G011400 Gossypium hirsutum HOM05D003508 ORTHO05D004579 7.4e-74 281.2 199 67.8
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 1.3e-73 280.4 198 67.7
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 1.6e-73 280.0 199 67.8
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 1.6e-73 280.0 201 66.2
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 2.1e-73 279.6 199 67.3
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 2.1e-73 279.6 199 67.3
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 2.1e-73 279.6 199 67.3
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 2.8e-73 279.3 199 67.8
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 2.8e-73 279.3 199 67.8
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 2.8e-73 279.3 211 63.5
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 3.6e-73 278.9 199 67.8
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 3.6e-73 278.9 199 66.8
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 6.2e-73 278.1 199 67.3
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 6.2e-73 278.1 202 68.3
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 1.4e-72 276.9 199 66.3
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 1.4e-72 276.9 199 66.8
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 1.4e-72 276.9 220 62.3
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 2.4e-72 276.2 221 61.5
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 2.4e-72 276.2 199 65.8
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 6.9e-72 274.6 199 63.8
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 1.7e-70 270.0 199 65.3
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 3.8e-70 268.9 200 64.0
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 4.9e-70 268.5 185 68.1
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 4.9e-70 268.5 199 64.8
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.9e-69 266.5 212 61.8
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.9e-69 266.5 212 61.8
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.9e-69 266.5 212 61.8
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 2.4e-69 266.2 216 63.0
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 3.5e-68 262.3 199 64.8
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 6.0e-68 261.5 199 63.3
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 1.0e-67 260.8 199 64.3
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 1.0e-67 260.8 199 64.8
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 1.0e-67 260.8 182 67.0
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 1.3e-67 260.4 199 65.3
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 3.0e-67 259.2 199 63.3
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 8.7e-67 257.7 199 64.3
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 1.9e-66 256.5 199 63.3
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 2.5e-66 256.1 199 63.8
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 4.3e-66 255.4 198 62.6
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 4.3e-66 255.4 196 60.2
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 7.4e-66 254.6 199 62.3
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 9.6e-66 254.2 199 63.8
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 8.1e-65 251.1 199 63.3
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 2.0e-63 246.5 206 56.8
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.0e-62 244.2 217 58.5
Mapoly0007s0128 Marchantia polymorpha HOM05D003508 ORTHO05D004579 7.1e-61 238.0 198 55.6
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 5.1e-59 231.9 214 53.3
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.5e-58 230.3 198 56.6
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 7.4e-58 228.0 199 57.8
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 2.8e-57 226.1 198 58.6
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 2.4e-56 223.0 198 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 3.1e-56 222.6 198 55.1
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 1.9e-53 213.4 199 57.3
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 3.6e-52 209.1 182 57.1
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 1.5e-47 193.7 122 73.0
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 7.7e-47 191.4 141 64.5
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.1e-45 187.6 198 50.5
CsaV3_7G016180 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.1e-45 187.6 198 50.5
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 5.5e-45 185.3 200 51.0
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 1.2e-44 184.1 214 44.9
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 1.6e-44 183.7 199 50.8
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 7.9e-44 181.4 142 62.0
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.7e-41 173.7 155 57.4
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 5.3e-40 168.7 126 63.5
TAR636G1619 Trochodendron aralioides HOM05D003508 ORTHO05D004579 3.2e-37 159.5 133 60.2
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 7.0e-32 141.7 86 76.7
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 7.0e-32 141.7 99 66.7
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 1.7e-30 137.1 82 75.6
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 8.5e-30 134.8 92 69.6
SMO203G0126 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 7.0e-24 115.2 79 68.4
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 1.3e-22 110.9 98 56.1
Cfa022308 Carpinus fangiana HOM05D003508 ORTHO05D004579 5.0e-22 109.0 106 50.0
SMO197G0052 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 8.0e-20 101.7 120 49.2
Duzib128G1625 Durio zibethinus HOM05D003508 ORTHO05D004579 1.8e-16 90.5 73 56.2
Lsat_1_v5_gn_3_135760 Lactuca sativa HOM05D000041 ORTHO05D000452 1.6e-15 87.4 65 63.1
Peaxi162Scf00173g00513 Petunia axillaris HOM05D003508 ORTHO05D004579 8.6e-14 81.6 67 59.7


User provided reference genes

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