Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0261 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 8.2e-205 716.8 367 100.0
CDE06G1623 Ceratophyllum demersum HOM05D000725 ORTHO05D003141 1.7e-173 612.8 354 88.4
Aqoxy5G01532 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 1.5e-20 104.8 89 56.2
TAR625G0592 Trochodendron aralioides HOM05D000725 ORTHO05D003141 2.5e-20 104.0 91 57.1
PSO700G0205 Papaver somniferum HOM05D000725 ORTHO05D003141 4.3e-20 103.2 367 29.7
Nitab4.5_0012853g0020 Nicotiana tabacum HOM05D000725 ORTHO05D003141 1.6e-19 101.3 341 29.3
PSO731G0040 Papaver somniferum HOM05D000725 ORTHO05D003141 2.1e-19 100.9 365 27.9
MBI11_g32386_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D003141 2.8e-19 100.5 160 39.4
CAN.G1544.11 Capsicum annuum HOM05D000725 ORTHO05D003141 4.8e-19 99.8 342 29.5
Dinv23485 Davidia involucrata HOM05D000725 ORTHO05D003141 6.2e-19 99.4 91 51.6
vmacro17455 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 2.4e-18 97.4 112 43.8
Aqoxy5G01538 Aquilegia oxysepala HOM05D000725 ORTHO05D003141 3.1e-18 97.1 421 26.6
Rhsim05G0070700 Rhododendron simsii HOM05D000725 ORTHO05D003141 3.1e-18 97.1 342 25.7
PSO782G2318 Papaver somniferum HOM05D000725 ORTHO05D003141 4.0e-18 96.7 361 29.6
Peaxi162Scf00016g00426 Petunia axillaris HOM05D000725 ORTHO05D003141 4.0e-18 96.7 338 29.6
Hund06249 Selenicereus undatus HOM05D000725 ORTHO05D003141 4.0e-18 96.7 88 56.8
Cc02_g17200 Coffea canephora HOM05D000725 ORTHO05D003141 9.0e-18 95.5 91 51.6
Sc14g0002030 Simmondsia chinensis HOM05D000725 ORTHO05D003141 9.0e-18 95.5 102 49.0
Actinidia02233 Actinidia chinensis HOM05D000725 ORTHO05D003141 1.5e-17 94.7 345 27.8
ATR0665G425 Amborella trichopoda HOM05D000725 ORTHO05D003141 2.0e-17 94.4 77 53.2
CiPaw.06G132300 Carya illinoinensis HOM05D000725 ORTHO05D003141 2.0e-17 94.4 106 46.2
Lj6g0012773 Lotus japonicus HOM05D000725 ORTHO05D003141 2.0e-17 94.4 96 53.1
EL10Ac9g21686 Beta vulgaris HOM05D000725 ORTHO05D003141 4.5e-17 93.2 351 25.9
ClCG11G004110 Citrullus lanatus HOM05D000725 ORTHO05D003141 4.5e-17 93.2 365 27.9
MELO3C023332.2 Cucumis melo HOM05D000725 ORTHO05D003141 4.5e-17 93.2 365 28.2
AUR62011280 Chenopodium quinoa HOM05D000725 ORTHO05D003141 5.8e-17 92.8 351 26.5
PGSC0003DMG400030952 Solanum tuberosum HOM05D000725 ORTHO05D003141 5.8e-17 92.8 367 28.6
CiPaw.05G070200 Carya illinoinensis HOM05D000725 ORTHO05D003141 9.9e-17 92.0 91 50.5
Migut.B00205 Erythranthe guttata HOM05D000725 ORTHO05D003141 9.9e-17 92.0 352 26.7
Lj3g0000422 Lotus japonicus HOM05D000725 ORTHO05D003141 1.3e-16 91.7 87 56.3
Thecc.02G079900 Theobroma cacao HOM05D000725 ORTHO05D003141 1.3e-16 91.7 91 51.6
PSO832G3117 Papaver somniferum HOM05D000725 ORTHO05D003141 2.2e-16 90.9 382 28.8
Prupe.8G090000 Prunus persica HOM05D000725 ORTHO05D003141 2.2e-16 90.9 99 49.5
Sed0009304 Sechium edule HOM05D000725 ORTHO05D003141 2.2e-16 90.9 366 27.0
Cpa.g.sc1026.2 Carica papaya HOM05D000725 ORTHO05D003141 2.9e-16 90.5 86 51.2
ECA234G1026 Erigeron canadensis HOM05D000725 ORTHO05D003141 2.9e-16 90.5 355 26.8
Gohir.A12G042200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 2.9e-16 90.5 90 51.1
Gohir.D12G030100 Gossypium hirsutum HOM05D000725 ORTHO05D003141 2.9e-16 90.5 90 50.0
arahy.Tifrunner.gnm1.ann1.S1J40P Arachis hypogaea HOM05D000725 ORTHO05D003141 3.8e-16 90.1 99 47.5
CsaV3_2G015070 Cucumis sativus L. HOM05D000725 ORTHO05D003141 3.8e-16 90.1 150 40.7
Dinv42034 Davidia involucrata HOM05D000725 ORTHO05D003141 3.8e-16 90.1 91 48.4
Rhsim11G0180800 Rhododendron simsii HOM05D000725 ORTHO05D003141 3.8e-16 90.1 135 37.0
Gorai.008G031000 Gossypium raimondii HOM05D000725 ORTHO05D003141 4.9e-16 89.7 90 50.0
CSS0026816 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 6.4e-16 89.4 172 35.5
Ciclev10027795m.g Citrus clementina HOM05D000725 ORTHO05D003141 6.4e-16 89.4 91 51.6
Gorai.013G034700 Gossypium raimondii HOM05D000725 ORTHO05D003141 6.4e-16 89.4 99 50.5
Nitab4.5_0003234g0070 Nicotiana tabacum HOM05D000725 ORTHO05D003141 6.4e-16 89.4 89 50.6
Duzib248G0474 Durio zibethinus HOM05D000725 ORTHO05D003141 8.4e-16 89.0 89 53.9
AT2G16390 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 1.1e-15 88.6 91 51.6
Atru.chr5.3086 Acer truncatum HOM05D000725 ORTHO05D003141 1.4e-15 88.2 73 60.3
arahy.Tifrunner.gnm1.ann1.XRRC6E Arachis hypogaea HOM05D000725 ORTHO05D003141 1.4e-15 88.2 99 46.5
MD10G1068100 Malus domestica HOM05D000725 ORTHO05D003141 1.4e-15 88.2 107 43.9
PSO210G6882 Papaver somniferum HOM05D000725 ORTHO05D003141 1.4e-15 88.2 384 29.7
Actinidia27877 Actinidia chinensis HOM05D000725 ORTHO05D003141 1.9e-15 87.8 139 38.1
MSTRG.16829 Avicennia marina HOM05D000725 ORTHO05D003141 1.9e-15 87.8 346 24.6
Gohir.D13G030500 Gossypium hirsutum HOM05D000725 ORTHO05D003141 1.9e-15 87.8 99 49.5
Gohir.A13G032200 Gossypium hirsutum HOM05D000725 ORTHO05D003141 2.4e-15 87.4 99 49.5
Lj5A193T102 Lonicera japonica HOM05D000725 ORTHO05D003141 2.4e-15 87.4 85 48.2
Lalb_Chr01g0008001 Lupinus albus HOM05D000725 ORTHO05D003141 3.2e-15 87.0 86 54.7
Potri.004G159000 Populus trichocarpa HOM05D000725 ORTHO05D003141 3.2e-15 87.0 70 61.4
VMungo1127G0892 Vigna mungo HOM05D000725 ORTHO05D003141 3.2e-15 87.0 104 46.2
Glyma.12G236100 Glycine max HOM05D000725 ORTHO05D003141 4.2e-15 86.7 77 55.8
Glyma.13G201800 Glycine max HOM05D000725 ORTHO05D003141 4.2e-15 86.7 89 49.4
Sopen01g052160 Solanum pennellii HOM05D000725 ORTHO05D003141 4.2e-15 86.7 89 51.7
TWI75G0750 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 5.4e-15 86.3 89 52.8
CSS0026935 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D003141 7.1e-15 85.9 127 38.6
Eucgr.G01701 Eucalyptus grandis HOM05D000725 ORTHO05D003141 7.1e-15 85.9 79 48.1
Lj7A123T30 Lonicera japonica HOM05D000725 ORTHO05D003141 7.1e-15 85.9 72 55.6
Lj5g0003943 Lotus japonicus HOM05D000725 ORTHO05D003141 7.1e-15 85.9 100 48.0
QL11p045305 Quercus lobata HOM05D000725 ORTHO05D003141 7.1e-15 85.9 112 42.9
Lj1g0015165 Lotus japonicus HOM05D000725 ORTHO05D003141 9.3e-15 85.5 100 48.0
Lj5g0009315 Lotus japonicus HOM05D000725 ORTHO05D003141 9.3e-15 85.5 100 48.0
Lj5g0015696 Lotus japonicus HOM05D000725 ORTHO05D003141 9.3e-15 85.5 100 48.0
Lj6g0007539 Lotus japonicus HOM05D000725 ORTHO05D003141 9.3e-15 85.5 100 48.0
Ah.01g019080 Amaranthus hybridus HOM05D000725 ORTHO05D003141 1.2e-14 85.1 85 49.4
VMungo1127G1148 Vigna mungo HOM05D000725 ORTHO05D003141 1.2e-14 85.1 87 48.3
Sp3g29660 Schrenkiella parvula HOM05D000725 ORTHO05D003141 1.6e-14 84.7 346 24.9
TPR.G23932 Trifolium pratense HOM05D000725 ORTHO05D003141 1.6e-14 84.7 69 59.4
Lalb_Chr19g0132271 Lupinus albus HOM05D000725 ORTHO05D003141 2.1e-14 84.3 192 34.9
Potri.009G120700 Populus trichocarpa HOM05D000725 ORTHO05D003141 2.1e-14 84.3 356 25.0
CANSAT11G1287 Cannabis sativa HOM05D000725 ORTHO05D003141 2.7e-14 84.0 75 53.3
Cc00_g19470 Coffea canephora HOM05D000725 ORTHO05D003141 2.7e-14 84.0 93 47.3
Haze_02322 Corylus avellana HOM05D000725 ORTHO05D003141 2.7e-14 84.0 122 40.2
Sed0003616 Sechium edule HOM05D000725 ORTHO05D003141 2.7e-14 84.0 121 39.7
TAR381G1393 Trochodendron aralioides HOM05D000725 ORTHO05D003141 2.7e-14 84.0 50 72.0
AL3G52550 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 3.5e-14 83.6 90 46.7
Manes.11G082500 Manihot esculenta HOM05D000725 ORTHO05D003141 3.5e-14 83.6 90 51.1
QL11p045293 Quercus lobata HOM05D000725 ORTHO05D003141 3.5e-14 83.6 344 25.9
QL11p045326 Quercus lobata HOM05D000725 ORTHO05D003141 3.5e-14 83.6 148 35.8
COL.COLO4_15200 Corchorus olitorius HOM05D000725 ORTHO05D003141 4.6e-14 83.2 92 48.9
Oeu041616.1 Olea europaea HOM05D000725 ORTHO05D003141 4.6e-14 83.2 367 23.7
TWI79G0585 Tripterygium wilfordii HOM05D000725 ORTHO05D003141 4.6e-14 83.2 75 56.0
Solyc01g109970.3 Solanum lycopersicum HOM05D000725 ORTHO05D003141 6.0e-14 82.8 344 27.3
Manes.04G086500 Manihot esculenta HOM05D000725 ORTHO05D003141 7.9e-14 82.4 81 53.1
Medtr2g437480 Medicago truncatula HOM05D000725 ORTHO05D003141 7.9e-14 82.4 69 55.1
CARHR106640 Cardamine hirsuta HOM05D000725 ORTHO05D003141 1.0e-13 82.0 72 51.4
FAN24G2419 Fragaria x ananassa HOM05D000725 ORTHO05D003141 1.0e-13 82.0 99 41.4
Phvul.011G210600 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 1.0e-13 82.0 105 46.7
Phvul.011G210800 Phaseolus vulgaris HOM05D000725 ORTHO05D003141 1.0e-13 82.0 93 44.1
TPR.G1890 Trifolium pratense HOM05D000725 ORTHO05D003141 1.0e-13 82.0 94 45.7
Psat7g126840 Pisum sativum HOM05D000725 ORTHO05D003141 1.8e-13 81.3 70 52.9
RcHm_v2.0_Chr6g0266061 Rosa chinensis HOM05D000725 ORTHO05D003141 1.8e-13 81.3 103 42.7
HanXRQChr03g0069371 Helianthus annuus HOM05D000725 ORTHO05D003141 3.9e-13 80.1 100 45.0
THA.LOC104819623 Tarenaya hassleriana HOM05D000725 ORTHO05D003141 3.9e-13 80.1 354 24.9
FvH4_2g09760 Fragaria vesca HOM05D000725 ORTHO05D003141 5.1e-13 79.7 71 52.1
FAN15G1535 Fragaria x ananassa HOM05D000725 ORTHO05D003141 5.1e-13 79.7 71 52.1
FAN27G2965 Fragaria x ananassa HOM05D000725 ORTHO05D003141 5.1e-13 79.7 71 52.1
Os06g0255700 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 6.7e-13 79.3 350 26.0
Aa31LG8G13750 Aethionema arabicum HOM05D000725 ORTHO05D003141 1.1e-12 78.6 88 42.0
Ca_23901_v3 Cicer arietinum L. HOM05D000725 ORTHO05D003141 1.1e-12 78.6 86 51.2
DCAR_003655 Daucus carota HOM05D000725 ORTHO05D003141 1.1e-12 78.6 125 38.4
SHI05568 Sapria himalayana HOM05D000725 ORTHO05D003141 1.5e-12 78.2 131 36.6
CANSAT11G1508 Cannabis sativa HOM05D000725 ORTHO05D003141 1.9e-12 77.8 123 37.4
GSVIVG01024512001 Vitis vinifera HOM05D000725 ORTHO05D003141 1.9e-12 77.8 340 24.7
Os03g0165266 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 2.5e-12 77.4 114 39.5
Medtr8g037345 Medicago truncatula HOM05D000725 ORTHO05D003141 3.3e-12 77.0 88 47.7
vmacro02076 Vaccinium macrocarpon HOM05D000725 ORTHO05D003141 3.3e-12 77.0 121 36.4
COL.COLO4_25995 Corchorus olitorius HOM05D000725 ORTHO05D003141 4.3e-12 76.6 88 47.7
Psat4g193880 Pisum sativum HOM05D000725 ORTHO05D003141 4.3e-12 76.6 64 57.8
unitig_21.g20795 Utricularia gibba HOM05D000725 ORTHO05D003141 4.3e-12 76.6 77 46.8
PGR042G0782 Punica granatum HOM05D000725 ORTHO05D003141 5.6e-12 76.3 98 41.8
AUR62016777 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.3e-11 75.1 86 45.3
RcHm_v2.0_Chr1g0330471 Rosa chinensis HOM05D000725 ORTHO05D003141 1.3e-11 75.1 116 40.5
Carub.0003s3016 Capsella rubella HOM05D000725 ORTHO05D003141 1.6e-11 74.7 352 25.3
Os08g0289400 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 2.8e-11 73.9 303 26.1
PSO063G2790 Papaver somniferum HOM05D000725 ORTHO05D003141 2.8e-11 73.9 50 64.0
GSVIVG01024225001 Vitis vinifera HOM05D000725 ORTHO05D003141 4.8e-11 73.2 133 37.6
RcHm_v2.0_Chr6g0266081 Rosa chinensis HOM05D000725 ORTHO05D003141 6.2e-11 72.8 67 47.8
Prupe.8G089900 Prunus persica HOM05D000725 ORTHO05D003141 8.1e-11 72.4 73 43.8
BcaB08g34646 Brassica carinata HOM05D000725 ORTHO05D003141 1.1e-10 72.0 348 23.6
AUR62013100 Chenopodium quinoa HOM05D000725 ORTHO05D003141 1.1e-10 72.0 90 38.9
ECA240G2411 Erigeron canadensis HOM05D000725 ORTHO05D003141 1.1e-10 72.0 351 25.1
Os07g0434500 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D003141 1.1e-10 72.0 85 40.0
A03p45780 Brassica napus HOM05D000394 ORTHO05D003141 1.4e-10 71.6 129 38.8
BraA03t13708Z Brassica rapa HOM05D000394 ORTHO05D003141 1.4e-10 71.6 129 38.8
SGA_v2.0_scaffold58G20498 Striga asiatica HOM05D000725 ORTHO05D003141 1.4e-10 71.6 70 44.3
ECA234G2709 Erigeron canadensis HOM05D000725 ORTHO05D003141 2.4e-10 70.9 96 37.5
DCAR_028963 Daucus carota HOM05D000725 ORTHO05D003141 3.1e-10 70.5 135 34.1
PGR042G3366 Punica granatum HOM05D000725 ORTHO05D003141 4.0e-10 70.1 112 39.3
Zm00001eb173050 Zea mays HOM05D000725 ORTHO05D003141 4.0e-10 70.1 329 25.5
Ah.01g009440 Amaranthus hybridus HOM05D000725 ORTHO05D003141 5.3e-10 69.7 89 37.1
BcaC01g03023 Brassica carinata HOM05D000394 ORTHO05D003141 5.3e-10 69.7 347 24.5
C03p57010 Brassica napus HOM05D000394 ORTHO05D003141 5.3e-10 69.7 347 24.5
BolC3t17979H Brassica oleracea HOM05D000394 ORTHO05D003141 5.3e-10 69.7 347 24.5
Thhalv10022532m.g Eutrema salsugineum HOM05D000725 ORTHO05D003141 5.3e-10 69.7 342 23.7
Hund06399 Selenicereus undatus HOM05D000725 ORTHO05D003141 6.9e-10 69.3 139 34.5
COL.COLO4_25997 Corchorus olitorius HOM05D000725 ORTHO05D003141 1.5e-09 68.2 126 30.2
A02p25850 Brassica napus HOM05D000725 ORTHO05D003141 2.6e-09 67.4 109 37.6
DCAR_001556 Daucus carota HOM05D000725 ORTHO05D003141 2.6e-09 67.4 74 40.5
Sp4g15610 Schrenkiella parvula HOM05D000725 ORTHO05D003141 3.4e-09 67.0 106 34.9
AL4G10630 Arabidopsis lyrata HOM05D000725 ORTHO05D003141 9.9e-09 65.5 374 23.5
CARHR112360 Cardamine hirsuta HOM05D000725 ORTHO05D003141 9.9e-09 65.5 92 38.0
EL10Ac9g21454 Beta vulgaris HOM05D000725 ORTHO05D003141 3.8e-08 63.5 98 33.7
Carub.0004s0050 Capsella rubella HOM05D000725 ORTHO05D003141 4.9e-08 63.2 170 28.2
BcaC02g07841 Brassica carinata HOM05D000725 ORTHO05D003141 6.4e-08 62.8 134 32.1
A04p25600 Brassica napus HOM05D000725 ORTHO05D003141 6.4e-08 62.8 124 33.1
BolC4t27758H Brassica oleracea HOM05D000725 ORTHO05D003141 6.4e-08 62.8 106 37.7
HanXRQChr03g0069421 Helianthus annuus HOM05D000725 ORTHO05D003141 6.4e-08 62.8 42 57.1
C04p62740 Brassica napus HOM05D000725 ORTHO05D003141 8.4e-08 62.4 135 33.3
BraA04t18064Z Brassica rapa HOM05D000725 ORTHO05D003141 2.4e-07 60.8 125 32.8
Haze_02328 Corylus avellana HOM05D000725 ORTHO05D003141 2.4e-07 60.8 125 30.4
GSVIVG01023832001 Vitis vinifera HOM05D000725 ORTHO05D003141 4.2e-07 60.1 44 47.7
BcaB06g28665 Brassica carinata HOM05D000725 ORTHO05D003141 5.5e-07 59.7 65 44.6
Lsat_1_v5_gn_5_120421 Lactuca sativa HOM05D000725 ORTHO05D003141 1.2e-06 58.5 343 24.2
BcaB06g28666 Brassica carinata HOM05D000725 ORTHO05D003141 4.6e-06 56.6 75 38.7
AUR62010106 Chenopodium quinoa HOM05D000725 ORTHO05D003141 4.6e-06 56.6 42 45.2
AT2G21450 Arabidopsis thaliana HOM05D000725 ORTHO05D003141 7.9e-06 55.8 143 29.4
Rhsim04G0037100 Rhododendron simsii HOM05D000725 ORTHO05D003141 7.9e-06 55.8 98 37.8
Zm00001eb416780 Zea mays HOM05D000725 ORTHO05D003141 7.9e-06 55.8 318 23.6


User provided reference genes

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