Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.1e-305 1051.2 612 100.0
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.6e-205 718.8 522 86.4
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.5e-182 642.9 617 61.8
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 2.6e-179 632.9 653 57.7
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 5.8e-179 631.7 617 59.8
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 4.9e-178 628.6 678 62.5
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 1.0e-175 620.9 618 58.9
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 6.9e-172 608.2 626 57.0
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 9.0e-172 607.8 600 60.8
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 3.8e-170 602.4 656 55.0
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 4.9e-170 602.1 631 57.5
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 1.1e-169 600.9 705 52.1
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 5.4e-169 598.6 629 56.1
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 1.2e-168 597.4 646 60.2
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 2.1e-168 596.7 654 54.7
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 7.9e-168 594.7 660 54.1
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.0e-167 594.3 655 54.2
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.3e-167 593.2 673 52.3
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 3.3e-166 589.3 669 53.4
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 3.3e-166 589.3 630 54.3
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-165 587.4 630 54.1
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 2.1e-165 586.6 669 53.2
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.4e-163 579.3 694 51.3
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 9.9e-163 577.8 610 55.4
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 1.3e-162 577.4 686 57.0
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 1.7e-162 577.0 649 53.0
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 8.4e-162 574.7 656 59.3
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.4e-161 573.9 622 54.3
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 2.4e-161 573.2 649 53.3
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 3.2e-161 572.8 650 52.6
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 4.2e-161 572.4 702 49.6
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 9.3e-161 571.2 645 53.0
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 2.1e-160 570.1 653 51.6
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 4.6e-160 568.9 657 57.8
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 1.0e-159 567.8 657 56.2
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 1.3e-159 567.4 662 51.4
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 2.3e-159 566.6 662 57.3
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.1e-159 565.5 636 60.4
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 5.1e-159 565.5 616 61.0
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 6.7e-159 565.1 629 54.2
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 8.7e-159 564.7 651 53.6
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.5e-158 563.9 653 53.0
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.9e-158 563.5 666 51.2
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 1.6e-157 560.5 619 60.3
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 2.4e-156 556.6 683 51.1
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 4.0e-156 555.8 615 60.5
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 2.6e-155 553.1 656 58.8
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 3.4e-155 552.7 648 52.8
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 5.8e-155 552.0 691 50.4
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 5.8e-155 552.0 634 55.2
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 7.6e-155 551.6 648 52.5
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 2.2e-154 550.1 667 54.9
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 2.9e-154 549.7 653 51.1
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 4.9e-154 548.9 646 56.8
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 6.5e-154 548.5 683 54.9
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 7.1e-153 545.0 622 52.1
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 9.3e-153 544.7 656 50.3
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 6.0e-152 542.0 658 49.7
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 6.0e-152 542.0 630 52.1
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.0e-151 539.7 696 50.9
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.9e-151 539.3 698 52.6
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 3.9e-151 539.3 652 52.1
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 5.1e-151 538.9 669 49.5
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.9e-150 537.0 650 50.3
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.9e-150 537.0 686 52.8
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.3e-150 535.8 684 53.2
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.7e-150 535.4 650 50.2
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 7.4e-150 535.0 696 52.4
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 9.7e-150 534.6 692 52.7
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 2.1e-149 533.5 618 51.6
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.1e-148 531.2 650 50.0
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.8e-148 530.4 676 48.4
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.8e-148 530.4 637 51.6
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 2.6e-147 526.6 619 51.4
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 1.0e-146 524.6 695 48.1
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.7e-146 523.9 626 51.4
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 2.9e-146 523.1 655 49.9
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.1e-145 521.2 672 53.3
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 3.2e-145 519.6 629 51.0
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.6e-144 517.3 624 51.1
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.6e-144 517.3 641 49.1
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.8e-143 513.8 663 49.9
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 8.7e-143 511.5 655 50.2
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.9e-142 510.4 650 49.5
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.9e-142 510.4 650 49.5
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 5.7e-142 508.8 641 53.4
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.7e-142 508.8 685 52.7
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.4e-140 504.2 655 48.2
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 1.5e-139 500.7 628 48.7
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 3.4e-139 499.6 624 53.0
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 5.9e-139 498.8 632 50.6
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 1.0e-138 498.0 617 56.6
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 2.2e-138 496.9 636 51.7
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 6.1e-136 488.8 638 48.1
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 4.1e-132 476.1 641 46.8
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 2.2e-130 470.3 479 62.0
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.4e-127 461.1 623 52.2
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 5.2e-127 459.1 650 51.2
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 2.6e-118 430.3 443 56.2
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 6.3e-117 425.6 587 46.8
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 2.4e-116 423.7 443 55.3
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 7.0e-116 422.2 595 45.7
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 3.2e-113 413.3 483 51.3
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 6.1e-112 409.1 673 42.2
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 6.1e-112 409.1 673 42.2
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 2.6e-110 403.7 606 44.1
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 3.7e-109 399.8 654 44.6
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.9e-106 390.2 494 54.5
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 3.7e-101 373.2 478 54.2
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.7e-99 367.1 448 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.8e-98 363.2 615 41.1
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 4.7e-96 356.3 472 47.0
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 6.1e-96 355.9 397 52.6
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 9.8e-94 348.6 640 45.3
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 3.2e-92 343.6 456 47.6
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 5.4e-92 342.8 657 39.9
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 2.5e-89 334.0 538 42.8
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 4.9e-85 319.7 592 40.0
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 9.5e-81 305.4 681 36.6
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 5.2e-79 299.7 547 40.8
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 3.7e-77 293.5 304 56.6
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 5.6e-73 279.6 337 62.0
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 9.3e-60 235.7 220 58.6
MBI14_g36867_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.2e-59 235.3 252 56.0
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 1.2e-59 235.3 324 47.5
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 2.5e-57 227.6 375 42.7
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 8.1e-56 222.6 565 35.0
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 5.8e-54 216.5 276 48.9
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 3.0e-50 204.1 244 50.4
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 8.1e-48 196.1 529 35.0
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 4.5e-46 190.3 351 38.7
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 4.5e-46 190.3 351 38.7
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 9.3e-44 182.6 175 58.9
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.6e-43 181.8 147 70.7
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 1.3e-40 172.2 311 40.2
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 6.2e-40 169.9 235 47.2
VMungo1127G1632 Vigna mungo HOM05D003241 ORTHO05D003812 6.2e-40 169.9 94 88.3
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-38 164.9 328 38.1
QL06p040345 Quercus lobata HOM05D003241 ORTHO05D003812 6.0e-35 153.3 134 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 2.5e-33 147.9 280 37.9
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 3.3e-33 147.5 280 37.9
QL04p053119 Quercus lobata HOM05D003241 ORTHO05D003812 8.2e-32 142.9 121 65.3
AagrBONN_evm.TU.Sc2ySwM_344.222 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.0e-31 139.4 290 39.0
FAN07G0113 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.7e-29 135.2 81 84.0
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 3.2e-28 131.0 568 27.6
Eucgr.G01007 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.2e-27 129.0 248 39.1
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 3.6e-27 127.5 114 60.5
Haze_07845 Corylus avellana HOM05D003241 ORTHO05D003812 6.1e-27 126.7 107 62.6
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.4e-26 125.6 277 35.4
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 5.7e-25 120.2 149 49.7
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.8e-23 115.2 236 37.3
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.1e-23 114.4 338 35.2
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 9.1e-23 112.8 149 48.3
SalBow6G1591 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.5e-22 112.1 75 77.3
SalBow6G5333 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.5e-22 112.1 75 77.3
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 2.2e-21 108.2 635 26.6
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 5.0e-21 107.1 204 37.7
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 4.7e-19 100.5 211 36.0
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 1.1e-17 95.9 209 39.2
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 2.8e-16 91.3 80 58.8
Lj1A444G10 Lonicera japonica HOM05D003241 ORTHO05D003812 4.1e-15 87.4 71 62.0
Sopen06g019980 Solanum pennellii HOM05D003241 ORTHO05D003812 5.3e-15 87.0 69 63.8
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.2e-14 85.9 191 35.1
QL05p063869 Quercus lobata HOM05D003241 ORTHO05D003812 1.5e-14 85.5 109 45.0
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 2.6e-14 84.7 87 51.7
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 4.5e-14 84.0 214 34.1
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 8.5e-13 79.7 448 24.6
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 1.4e-12 79.0 156 34.0
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 3.2e-12 77.8 261 28.7
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 4.2e-12 77.4 67 61.2
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.6e-11 74.3 217 32.7
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 6.1e-11 73.6 55 72.7
RcHm_v2.0_Chr1g0362541 Rosa chinensis HOM05D003241 ORTHO05D003812 6.1e-11 73.6 55 65.5
Potri.003G148501 Populus trichocarpa HOM05D003241 ORTHO05D003812 3.0e-10 71.2 98 49.0
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.2e-08 65.1 74 51.4
RcHm_v2.0_Chr1g0362531 Rosa chinensis HOM05D003241 ORTHO05D025469 2.2e-08 65.1 49 61.2
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 3.7e-08 64.3 74 50.0
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 8.2e-08 63.2 76 50.0
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 1.4e-07 62.4 74 48.6
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 4.1e-07 60.8 111 38.7
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 7.0e-07 60.1 39 74.4
CARHR196420 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.2e-06 59.3 47 66.0
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 3.5e-06 57.8 136 33.8
QL03p023912 Quercus lobata HOM05D003241 ORTHO05D003812 3.5e-06 57.8 28 92.9
QL09p029974 Quercus lobata HOM05D003241 ORTHO05D003812 3.5e-06 57.8 28 92.9
QL93p0157_0007 Quercus lobata HOM05D003241 ORTHO05D003812 3.5e-06 57.8 28 92.9


User provided reference genes

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