Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4280 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 6.5e-37 156.8 73 100.0
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 2.1e-27 125.2 57 100.0
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 1.8e-26 122.1 57 96.5
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 3.0e-26 121.3 57 96.5
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 3.0e-26 121.3 57 96.5
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 3.0e-26 121.3 61 88.5
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 3.0e-26 121.3 57 96.5
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 3.0e-26 121.3 57 96.5
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 3.0e-26 121.3 57 96.5
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 3.0e-26 121.3 57 96.5
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 3.0e-26 121.3 57 96.5
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 4.0e-26 120.9 57 94.7
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 4.0e-26 120.9 57 94.7
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 4.0e-26 120.9 57 94.7
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 4.0e-26 120.9 57 94.7
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 5.2e-26 120.6 57 94.7
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 5.2e-26 120.6 57 93.0
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 5.2e-26 120.6 57 94.7
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 6.8e-26 120.2 57 94.7
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 6.8e-26 120.2 57 94.7
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 6.8e-26 120.2 57 94.7
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 6.8e-26 120.2 57 94.7
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 6.8e-26 120.2 57 94.7
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 6.8e-26 120.2 57 94.7
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 6.8e-26 120.2 57 94.7
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 8.8e-26 119.8 57 93.0
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 8.8e-26 119.8 57 93.0
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 8.8e-26 119.8 57 93.0
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 94.7
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 94.7
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 94.7
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 8.8e-26 119.8 57 93.0
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 93.0
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 91.2
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 94.7
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 94.7
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 91.2
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 93.0
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 91.2
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 91.2
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 91.2
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 93.0
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 91.2
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 1.2e-25 119.4 57 93.0
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 1.5e-25 119.0 57 93.0
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 1.5e-25 119.0 57 93.0
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 1.5e-25 119.0 57 93.0
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 1.5e-25 119.0 57 91.2
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.5e-25 119.0 57 93.0
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 91.2
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 91.2
CAN.G274.30 Capsicum annuum HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 93.0
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 91.2
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 94.7
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 91.2
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 93.0
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 91.2
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 91.2
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 2.0e-25 118.6 57 91.2
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 91.2
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 91.2
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 91.2
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 93.0
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 93.0
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 93.0
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 91.2
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 2.6e-25 118.2 57 93.0
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 3.4e-25 117.9 57 93.0
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 3.4e-25 117.9 57 91.2
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 3.4e-25 117.9 57 93.0
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 3.4e-25 117.9 57 89.5
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 3.4e-25 117.9 57 91.2
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 4.4e-25 117.5 57 93.0
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 4.4e-25 117.5 57 91.2
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 4.4e-25 117.5 57 93.0
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 4.4e-25 117.5 57 91.2
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 4.4e-25 117.5 57 91.2
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 4.4e-25 117.5 57 91.2
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 4.4e-25 117.5 57 89.5
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 5.7e-25 117.1 57 89.5
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 5.7e-25 117.1 57 89.5
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 5.7e-25 117.1 57 89.5
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 5.7e-25 117.1 57 91.2
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 5.7e-25 117.1 57 91.2
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 7.5e-25 116.7 57 89.5
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 7.5e-25 116.7 57 94.7
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 7.5e-25 116.7 57 91.2
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 7.5e-25 116.7 57 89.5
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 7.5e-25 116.7 57 89.5
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 7.5e-25 116.7 57 91.2
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 9.8e-25 116.3 56 92.9
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 1.3e-24 115.9 57 93.0
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 1.3e-24 115.9 57 86.0
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 1.3e-24 115.9 57 89.5
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 1.3e-24 115.9 57 89.5
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 1.7e-24 115.5 57 87.7
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 1.7e-24 115.5 57 89.5
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 1.7e-24 115.5 57 89.5
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.7e-24 115.5 57 89.5
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 1.7e-24 115.5 58 93.1
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.7e-24 114.4 57 87.7
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 4.9e-24 114.0 57 87.7
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 4.9e-24 114.0 57 86.0
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 4.9e-24 114.0 57 86.0
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 8.3e-24 113.2 57 87.7
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 8.3e-24 113.2 57 87.7
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 1.1e-23 112.8 57 87.7
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 1.4e-23 112.5 57 89.5
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 1.4e-23 112.5 57 86.0
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 1.4e-23 112.5 57 86.0
AagrBONN_evm.TU.Sc2ySwM_369.181 Anthoceros agrestis HOM05D000207 ORTHO05D004956 3.1e-23 111.3 61 80.3
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 3.1e-23 111.3 56 85.7
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 5.4e-23 110.5 57 84.2
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 9.1e-23 109.8 57 84.2
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.5e-22 107.8 57 82.5
Pp3c25_1640 Physcomitrium patens HOM05D000207 ORTHO05D004956 5.9e-22 107.1 61 75.4
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 7.7e-22 106.7 67 73.1
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.3e-21 105.1 73 69.9
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 2.3e-21 105.1 57 82.5
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 5.0e-21 104.0 80 65.0
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.1e-20 102.8 57 78.9
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 1.1e-20 102.8 57 80.7
Lj4g0019776 Lotus japonicus HOM05D000207 ORTHO05D004956 8.0e-19 96.7 48 89.6
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 9.8e-17 89.7 55 65.5
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.3e-16 89.4 44 90.9
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.7e-16 89.0 47 83.0
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 2.2e-16 88.6 41 97.6
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 2.2e-16 88.6 45 88.9
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.2e-16 88.6 43 90.7
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 2.8e-16 88.2 43 90.7
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 2.8e-16 88.2 57 64.9
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 3.7e-16 87.8 49 77.6
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.7e-16 87.8 45 86.7
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 3.7e-16 87.8 45 84.4
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 4.9e-16 87.4 41 95.1
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 4.9e-16 87.4 42 90.5
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 4.9e-16 87.4 41 92.7
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 4.9e-16 87.4 43 88.4
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 4.9e-16 87.4 41 95.1
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 6.3e-16 87.0 41 92.7
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 8.3e-16 86.7 41 95.1
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 8.3e-16 86.7 41 92.7
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 8.3e-16 86.7 41 92.7
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 8.3e-16 86.7 41 90.2
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 1.1e-15 86.3 41 92.7
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 1.1e-15 86.3 41 92.7
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.1e-15 86.3 41 92.7
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 1.1e-15 86.3 41 92.7
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 1.1e-15 86.3 41 90.2
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 1.4e-15 85.9 40 95.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.4e-15 85.9 42 90.5
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 1.8e-15 85.5 41 90.2
A09p67600 Brassica napus HOM05D000207 ORTHO05D004956 1.8e-15 85.5 41 90.2
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 3.2e-15 84.7 41 90.2
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 3.5e-14 81.3 40 90.0
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 4.3e-12 74.3 41 82.9
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 1.6e-11 72.4 34 91.2
Lj4g0025571 Lotus japonicus HOM05D000207 ORTHO05D004956 3.6e-11 71.2 40 77.5
vmacro16885 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.1e-10 68.2 39 82.1
Ah.14g081440 Amaranthus hybridus HOM05D000207 ORTHO05D004956 1.9e-07 58.9 36 72.2
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 2.7e-06 55.1 24 91.7


User provided reference genes

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