Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3300 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 2.8e-166 588.6 304 100.0
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 8.6e-99 364.4 357 55.5
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 2.6e-95 352.8 344 55.5
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 4.9e-94 348.6 342 55.0
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 8.3e-94 347.8 348 55.2
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 1.7e-91 340.1 342 54.4
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 3.9e-91 339.0 342 53.2
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 8.6e-91 337.8 342 52.9
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 1.5e-90 337.0 352 52.6
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 1.9e-90 336.7 342 54.1
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 9.5e-90 334.3 342 54.7
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 9.5e-90 334.3 342 54.4
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 2.1e-89 333.2 342 51.8
Lsat_1_v5_gn_2_129181 Lactuca sativa HOM05D004509 ORTHO05D005568 3.6e-89 332.4 342 54.1
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 4.7e-89 332.0 342 53.8
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 6.2e-89 331.6 342 54.1
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 8.0e-89 331.3 342 51.8
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.4e-88 330.5 316 54.1
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 2.3e-88 329.7 342 51.2
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.8e-88 328.2 316 53.8
Hma1.2p1_1640F.1_g295070 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 1.2e-87 327.4 343 52.5
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.5e-87 327.0 342 53.2
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 3.4e-87 325.9 342 52.9
MSTRG.8823 Avicennia marina HOM05D004509 ORTHO05D005568 5.8e-87 325.1 347 53.0
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 5.8e-87 325.1 346 51.7
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 5.8e-87 325.1 342 52.9
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 7.5e-87 324.7 332 53.6
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 9.8e-87 324.3 342 52.6
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.3e-86 323.9 342 52.3
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.7e-86 323.6 341 53.1
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.7e-86 323.6 342 50.9
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 2.2e-86 323.2 342 52.0
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 2.9e-86 322.8 342 50.9
HanXRQChr07g0205911 Helianthus annuus HOM05D004509 ORTHO05D005568 3.7e-86 322.4 342 51.2
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 6.4e-86 321.6 342 52.3
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.4e-85 320.5 342 51.2
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 1.4e-85 320.5 342 51.2
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 1.9e-85 320.1 342 51.5
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 2.4e-85 319.7 342 50.3
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 4.1e-85 318.9 342 50.9
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 5.4e-85 318.5 345 51.6
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 5.4e-85 318.5 342 51.8
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 5.4e-85 318.5 342 51.5
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 1.6e-84 317.0 315 51.1
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 1.6e-84 317.0 346 50.9
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 3.5e-84 315.8 358 47.8
Oeu022490.1 Olea europaea HOM05D004509 ORTHO05D005568 7.8e-84 314.7 342 52.0
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 7.8e-84 314.7 342 50.0
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 1.0e-83 314.3 342 49.7
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 3.0e-83 312.8 342 49.4
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 3.9e-83 312.4 339 49.9
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 8.6e-83 311.2 339 49.6
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 1.1e-82 310.8 310 51.3
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.1e-82 310.8 316 54.1
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 1.1e-82 310.8 343 51.0
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 1.9e-82 310.1 342 50.0
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 7.3e-82 308.1 330 52.1
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 1.2e-81 307.4 342 50.9
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 2.8e-81 306.2 342 50.3
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 3.6e-81 305.8 342 50.9
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 6.2e-81 305.1 342 50.6
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 6.2e-81 305.1 342 50.9
Oeu015322.1 Olea europaea HOM05D004509 ORTHO05D005568 8.1e-81 304.7 342 51.5
PGR042G2749 Punica granatum HOM05D004509 ORTHO05D005568 8.1e-81 304.7 338 49.7
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 1.1e-80 304.3 342 50.6
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 1.1e-80 304.3 342 50.6
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 1.8e-80 303.5 339 48.1
Lalb_Chr04g0264301 Lupinus albus HOM05D004509 ORTHO05D005568 4.0e-80 302.4 342 50.6
Hund04598 Selenicereus undatus HOM05D004509 ORTHO05D005568 4.0e-80 302.4 342 48.2
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 5.2e-80 302.0 342 50.3
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 5.2e-80 302.0 342 50.3
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 5.2e-80 302.0 342 50.6
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 6.8e-80 301.6 342 50.0
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 1.2e-79 300.8 342 50.3
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.5e-79 300.4 342 50.0
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 2.0e-79 300.1 342 50.6
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 2.0e-79 300.1 342 49.4
Migut.F00473 Erythranthe guttata HOM05D004509 ORTHO05D005568 2.6e-79 299.7 342 50.3
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 2.6e-79 299.7 354 48.6
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 4.4e-79 298.9 342 50.0
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 4.4e-79 298.9 342 50.0
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 5.8e-79 298.5 342 50.6
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 9.9e-79 297.7 342 50.0
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 1.3e-78 297.4 342 50.3
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 1.3e-78 297.4 342 49.4
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 1.7e-78 297.0 342 49.4
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 2.9e-78 296.2 342 48.8
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 3.7e-78 295.8 342 49.1
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 4.9e-78 295.4 342 49.7
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 8.3e-78 294.7 331 48.9
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 1.4e-77 293.9 342 48.8
Gorai.001G048500 Gossypium raimondii HOM05D004509 ORTHO05D005568 1.4e-77 293.9 342 49.4
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 1.9e-77 293.5 342 49.4
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 1.9e-77 293.5 342 50.0
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 1.9e-77 293.5 342 49.1
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 3.2e-77 292.7 342 49.1
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 4.1e-77 292.4 342 45.9
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 2.7e-76 289.7 346 49.4
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 3.5e-76 289.3 342 49.1
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 3.5e-76 289.3 342 48.0
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 3.0e-75 286.2 339 48.1
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 5.1e-75 285.4 342 48.5
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 6.6e-75 285.0 338 49.7
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 1.9e-74 283.5 361 44.6
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 2.8e-73 279.6 342 48.0
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 3.6e-73 279.3 306 48.4
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 5.2e-72 275.4 328 50.6
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 7.6e-71 271.6 347 47.6
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 1.7e-70 270.4 267 53.2
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 4.9e-70 268.9 405 40.5
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 1.4e-69 267.3 343 46.4
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 1.4e-69 267.3 343 46.4
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 3.5e-68 262.7 342 46.2
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 1.0e-67 261.2 342 45.9
SGA_v2.0_scaffold70G23600 Striga asiatica HOM05D004509 ORTHO05D005568 1.3e-67 260.8 342 47.1
Hma1.2p1_1132F.1_g260350 Hydrangea macrophylla HOM05D004509 ORTHO05D005568 1.1e-66 257.7 236 57.2
Lsat_1_v5_gn_9_52140 Lactuca sativa HOM05D004509 ORTHO05D005568 1.1e-66 257.7 330 45.5
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 7.3e-66 255.0 347 45.5
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 1.3e-62 244.2 166 77.1
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 1.4e-61 240.7 342 42.7
Zm00001eb105020 Zea mays HOM05D004509 ORTHO05D005568 3.5e-60 236.1 340 43.2
Mapoly0141s0003 Marchantia polymorpha HOM05D004509 ORTHO05D005568 1.3e-57 227.6 331 42.0
Mapoly0259s0001 Marchantia polymorpha HOM05D004509 ORTHO05D005568 1.3e-57 227.6 331 42.0
SMO298G0006 Selaginella moellendorffii HOM05D004509 ORTHO05D005568 5.3e-56 222.2 294 45.2
Zm00001eb321470 Zea mays HOM05D004509 ORTHO05D005568 5.3e-56 222.2 340 41.5
Os07g0484300 Oryza sativa ssp. japonica HOM05D004509 ORTHO05D005568 1.5e-55 220.7 292 45.5
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 3.2e-53 213.0 241 50.6
Pp3c3_10340 Physcomitrium patens HOM05D004509 ORTHO05D005568 9.3e-53 211.5 342 38.6
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 1.2e-52 211.1 211 53.6
Pp3c13_9770 Physcomitrium patens HOM05D004509 ORTHO05D005568 6.0e-52 208.8 330 39.7
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 1.4e-48 197.6 206 53.9
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 5.5e-45 185.7 317 39.4
Lsat_1_v5_gn_3_74740 Lactuca sativa HOM05D004509 ORTHO05D005568 1.0e-43 181.4 353 37.1
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 1.3e-43 181.0 222 47.3
Thhalv10014220m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 1.4e-40 171.0 221 46.6
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 1.2e-39 167.9 325 37.2
SEGI_41248 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 2.9e-38 163.3 217 45.6
BcaNung06355 Brassica carinata HOM05D004509 ORTHO05D005568 8.4e-38 161.8 205 49.3
arahy.Tifrunner.gnm1.ann1.WP6JS3 Arachis hypogaea HOM05D004509 ORTHO05D005568 1.1e-37 161.4 229 45.0
BcaC07g38179 Brassica carinata HOM05D004509 ORTHO05D005568 7.2e-37 158.7 138 60.9
Cpa.g.sc3.320 Carica papaya HOM05D004509 ORTHO05D005568 2.4e-32 143.7 169 47.3
SEGI_07953 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 2.6e-31 140.2 138 54.3
ClCG09G013190 Citrullus lanatus HOM05D004509 ORTHO05D005568 2.2e-25 120.6 184 42.4
Cpa.g.sc3.319 Carica papaya HOM05D004509 ORTHO05D005568 5.3e-24 115.9 74 70.3
SEGI_31032 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 1.9e-21 107.5 74 64.9
ClCG09G013200 Citrullus lanatus HOM05D004509 ORTHO05D005568 2.5e-21 107.1 74 67.6
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 5.1e-19 99.4 299 28.4
unitig_52.g17762 Utricularia gibba HOM05D000486 ORTHO05D000375 5.9e-15 85.9 119 45.4
EL10Ac1g01861 Beta vulgaris HOM05D004509 ORTHO05D005568 2.2e-14 84.0 157 38.2
Hma1.2p1_1132F.1_g260340 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 9.4e-13 78.6 90 46.7
Hma1.2p1_1640F.1_g295066 Hydrangea macrophylla HOM05D004509 ORTHO05D023994 9.4e-13 78.6 90 46.7
QL05p008713 Quercus lobata HOM05D004509 ORTHO05D023994 1.2e-12 78.2 80 46.2
CBR_g4830 Chara braunii HOM05D004509 ORTHO05D005568 6.7e-11 72.4 329 23.1
BcaC07g38178 Brassica carinata HOM05D004509 ORTHO05D023994 1.1e-08 65.1 77 46.8


User provided reference genes

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