Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 6.2e-149 530.8 272 100.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.1e-121 440.3 314 73.9
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 4.6e-120 434.9 314 71.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.0e-119 433.7 314 71.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.8e-119 433.0 314 71.7
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.3e-119 432.6 314 71.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.0e-119 432.2 314 70.1
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.5e-118 429.9 314 70.7
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.5e-118 429.9 314 71.3
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.9e-118 429.5 314 71.3
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.1e-117 426.0 314 70.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.8e-117 425.6 314 70.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.8e-117 425.6 314 70.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 6.3e-117 424.5 314 69.4
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 6.3e-117 424.5 314 70.4
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 8.2e-117 424.1 314 70.4
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.1e-116 423.7 314 69.4
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.1e-116 423.7 314 69.4
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 2.4e-116 422.5 314 69.7
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.4e-116 422.5 314 70.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-116 422.2 314 69.4
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-116 422.2 314 69.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.1e-116 422.2 314 70.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 5.3e-116 421.4 314 70.7
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 9.0e-116 420.6 314 68.5
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 9.0e-116 420.6 314 69.1
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.0e-116 420.6 314 69.1
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 9.0e-116 420.6 314 69.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.2e-115 420.2 314 69.7
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.5e-115 419.9 315 68.9
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.6e-115 419.1 316 70.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 4.5e-115 418.3 314 68.2
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.5e-115 418.3 345 64.3
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 5.9e-115 417.9 269 77.7
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 5.9e-115 417.9 314 68.5
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 5.9e-115 417.9 314 68.5
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 5.9e-115 417.9 314 68.2
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.0e-114 417.2 314 68.8
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.3e-114 416.8 314 68.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.3e-114 416.8 314 68.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.7e-114 416.4 314 68.2
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.7e-114 416.4 314 69.4
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.7e-114 416.4 314 69.4
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.7e-114 416.4 314 68.2
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.2e-114 416.0 314 68.2
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-114 416.0 314 68.8
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.2e-114 416.0 314 69.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.8e-114 415.2 314 67.8
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 5.0e-114 414.8 316 69.3
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 5.0e-114 414.8 314 68.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.4e-114 414.1 320 67.8
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 8.4e-114 414.1 314 68.5
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.1e-113 413.7 314 69.4
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.1e-113 413.7 314 67.8
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.4e-113 413.3 314 68.8
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.5e-113 412.5 314 68.2
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 5.5e-113 411.4 314 68.5
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 5.5e-113 411.4 314 67.8
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.2e-112 410.2 314 69.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 7.9e-112 407.5 314 67.2
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.0e-111 407.1 314 67.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.8e-111 406.4 314 66.9
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.3e-111 406.0 337 62.9
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.9e-111 405.2 314 66.2
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.9e-111 405.2 314 67.2
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.9e-111 405.2 314 66.9
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.5e-110 403.3 314 66.9
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.7e-110 401.4 314 66.6
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 5.7e-110 401.4 299 70.6
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.2e-109 399.4 314 66.2
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 2.2e-109 399.4 314 65.9
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 2.2e-109 399.4 321 65.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 2.8e-109 399.1 315 66.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.8e-109 398.3 314 66.2
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.8e-109 398.3 314 66.2
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.8e-109 398.3 314 65.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 6.3e-109 397.9 314 65.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 6.3e-109 397.9 314 65.9
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 6.3e-109 397.9 314 65.9
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 6.3e-109 397.9 303 69.0
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-108 397.1 314 65.6
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.1e-108 397.1 314 65.6
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.4e-108 396.7 314 65.9
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.8e-108 396.4 297 70.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 3.1e-108 395.6 314 64.3
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 6.9e-108 394.4 299 69.9
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 3.4e-107 392.1 341 61.9
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 7.7e-107 391.0 314 65.0
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.9e-106 389.0 314 63.7
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-105 387.1 326 63.5
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.1e-105 387.1 326 63.5
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-105 386.3 326 63.2
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 9.4e-105 384.0 297 68.7
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.6e-104 383.3 264 72.3
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 2.7e-104 382.5 314 62.7
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 6.1e-104 381.3 314 66.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 8.8e-103 377.5 314 61.5
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.3e-102 375.2 314 63.4
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 7.4e-102 374.4 314 61.1
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.7e-101 372.1 322 62.4
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.1e-100 369.0 314 60.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 2.3e-95 352.8 316 60.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 8.8e-95 350.9 286 65.0
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 2.4e-92 342.8 314 56.1
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 9.1e-92 340.9 267 66.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.2e-87 325.1 266 66.2
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.2e-87 325.1 266 66.2
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 6.5e-82 308.1 360 51.4
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.2e-81 305.4 230 70.9
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.0e-79 299.3 231 67.5
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-79 298.9 318 52.8
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 5.5e-73 278.5 162 81.5
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.2e-72 277.3 231 63.6
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 8.8e-71 271.2 162 79.0
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.9e-66 256.1 314 43.9
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 6.6e-66 255.0 164 75.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-59 233.4 179 66.5
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 7.8e-59 231.5 179 65.9
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-52 210.7 191 57.1
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-46 190.7 188 56.9
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.4e-46 189.5 113 78.8
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.4e-44 183.3 113 75.2
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.6e-43 179.1 171 59.1
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.0e-42 177.9 173 57.2
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 7.3e-41 171.8 102 79.4
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 8.1e-40 168.3 102 82.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.5e-38 164.1 148 56.8
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.9e-36 157.1 318 31.8
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-34 150.6 83 85.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.3e-33 145.2 91 76.9
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 2.1e-32 143.7 300 30.0
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.2e-31 139.0 76 86.8
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-28 130.2 172 43.0
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-27 127.5 125 55.2
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.1e-23 114.8 314 27.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-20 104.4 126 48.4
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.2e-20 102.8 88 59.1
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 4.2e-20 102.8 107 55.1
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.1e-20 102.1 105 52.4
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 1.0e-18 98.2 107 53.3
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.4e-15 87.0 51 80.4
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 9.9e-14 81.6 53 71.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.7e-13 80.9 59 78.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-10 70.5 103 43.7
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 5.6e-09 65.9 81 45.7
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.4e-07 61.2 42 69.0


User provided reference genes

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